Xenorhabdus doucetiae: XDD1_2195
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Entry
XDD1_2195 CDS
T03784
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
xdo
Xenorhabdus doucetiae
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xdo03016
]
XDD1_2195 (rnb)
Enzymes [BR:
xdo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
XDD1_2195 (rnb)
Transfer RNA biogenesis [BR:
xdo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
XDD1_2195 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
CDG17894
UniProt:
A0A068QSX4
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All DBs
Position
2250418..2252352
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AA seq
644 aa
AA seq
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MFQNNPLLAQLKQQLHAQTQRVEGLVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
TAAIHIDKEKEIADPESLVEPFLTRFVGRVQKKENDNRLWIIPDHPLLKDFIPCRPANHV
DHTFEHGDWAVAEMRRHPLKGDRGFHAEITGYITQGDDHYAPWWVTLTRHSLEREAPVMT
DCLLDESAERVDLTALDFVTIDSATTEDMDDALHITKNDDGSLKLSIAIADPTAYIEAGS
ELDKIAYQRSFTNYLPGFNIPMLPRELSDDLCSLRPNMRRPALVCQVSILKNGQLGDDIQ
FFSAWVESKFKLVYDEVSDWLEGQEGWKPKSDAVTTQITLLKEMCERRNDWRLQNALVFK
ERPDYRFILDEGGHVIDIVIEQRRSANRIVEEAMITANLCAAKILRDKLGFGIYNVHTGF
EPTQIEQVVDVLKEHGIEAEAQALLQLEGFCELRRELDKQPTQFLDSRIRRFQTFAEIKT
EPGPHFGLGFDAYATWTSPIRKYSDIINHRLLKAIIQQAEADKPTEDLCLQLTDRRRANR
MAERDVGDWLYARFLQPHAGTDKTFPAEIIDITRGGLRVRLVDNGAIAFVPGPFLHAVRD
EIQCSQETGSVLIKGETVHRLNDIINVRIEDVRMETRNIVARPV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataatccgctgcttgcgcagctaaaacagcaacttcacgctcaaacccag
cgcgtagaaggtttagtcaaaggaactgagaaaggctttggatttttagaagtcgacggt
caaaaaagttatttcatcccacctccctacatgaaaaaagtcatgcacggtgatcgaatt
accgctgctatccacatagacaaagaaaaagaaattgccgatcctgaatctctggttgaa
ccttttctgacccgttttgtcggcagagttcagaagaaagaaaacgacaatcggctatgg
attattccggatcatccattattaaaagactttatcccttgtcgtccggcaaaccacgtt
gaccatacgtttgaacatggcgattgggccgtggcggaaatgcgccggcatcccctgaaa
ggcgatcgcggttttcacgctgaaatcactggctatattacgcaaggtgatgaccactac
gccccgtggtgggtaacattaactcgccacagcctagaacgtgaagcgcctgtaatgaca
gattgcctgttggacgaaagcgccgaacgcgttgatctgaccgcgcttgattttgtcact
attgacagtgcaaccaccgaggatatggatgatgccctgcacatcaccaaaaatgatgat
ggcagcctgaaactttctattgccattgccgatcccaccgcttatatcgaggcaggtagt
gaactggacaaaattgcctatcaacgcagtttcaccaattatctgccgggcttcaatatt
cccatgcttccgcgtgagctctctgatgatctatgctctttgcgtcctaatatgcgccgt
ccggctctggtttgccaggtttctattctgaaaaatggtcaattgggcgatgatattcaa
ttcttctccgcatgggttgaatctaaatttaaactggtttacgacgaagtctcagactgg
ttagaaggtcaggaaggttggaaaccaaagtcagacgccgttaccacccaaatcacactg
ctgaaagagatgtgcgaacgccgcaatgactggcgtctgcaaaacgcgctggttttcaag
gagcgcccggattaccggtttatccttgatgaaggcggccatgttattgatatcgttata
gaacaacgccgttcagccaaccgtattgttgaagaagccatgatcaccgcgaatttatgt
gccgcgaaaattctgcgtgataaattgggctttggtatttataacgttcatactggcttt
gaaccgacccagattgagcaagtcgttgatgtccttaaagagcatggtattgaagctgag
gctcaagcattactgcaactggaagggttctgcgaattgcgtcgtgagttggataaacaa
ccgacccagttcctcgatagccgtatccgccgtttccaaacttttgctgaaatcaaaaca
gaacccggcccacactttggtctgggatttgatgcttacgcgacctggacatcccctatc
cgtaaatacagcgatatcatcaaccaccgtttgttgaaggcaattatccagcaagctgaa
gcagataaacccaccgaagatctctgcctgcaattgacagaccgccgccgggctaaccgc
atggcagaacgtgatgttggcgactggctttacgcccgtttcttgcaacctcacgccggc
acagataaaacattcccggcagaaattatcgatattacccgtggtggcctgcgagtccgg
ctggtagataacggtgccatcgctttcgttcccggacccttcctgcatgccgttcgtgat
gaaattcaatgcagtcaggaaaccggttccgtcttaattaaaggcgaaacggttcaccgt
ttgaatgacatcatcaacgtccgcattgaagatgtcagaatggaaacccgcaatattgtg
gcacgtcctgtatag
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