Xenorhabdus doucetiae: XDD1_2511
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Entry
XDD1_2511 CDS
T03784
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XDD1_2511 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xdo03019
]
XDD1_2511 (rne)
03009 Ribosome biogenesis [BR:
xdo03009
]
XDD1_2511 (rne)
Enzymes [BR:
xdo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XDD1_2511 (rne)
Messenger RNA biogenesis [BR:
xdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XDD1_2511 (rne)
Ribosome biogenesis [BR:
xdo03009
]
Prokaryotic type
rRNA processing factors
XDD1_2511 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CDG18210
UniProt:
A0A068QWG4
LinkDB
All DBs
Position
2653825..2657019
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AA seq
1064 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHAHGRPNIKDLLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRIELKEALSSLDVPEGMGLIVRTAGVGKSAEAL
QGDLNFRLKHWEAIKKAADNHPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
RQHITALGRPDFASKIKLYSGEVPLFSHYQIESQIESAFQREVRLPSGGSVVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTHQVHAIVPVQIASYLLNEKRQAVSAIEHRQGGVGVVIVPNDQMQ
SPHFSVLRVRKGEEISALSYLLPQLHEAEMAHVQDEVQHERKRPEQPAISTFDLPAEAAA
PAAVKAKTKEKKAVTTSQKPTEEPGLFSRFLSALKKMFSGEEEKQTQERGQKSSGNDNRR
PSERRNPRRQNQRRERTESDARNNRERDEQRKGRNTQQKNNVQDSTAMDNEARETQQQRR
EQRAERQRRRQEEKRQQQLETKAQQTIPQPEMVEEEVEERQPVMPRRQRRQLEQKVRITD
EVKQEANVVALPAVLPESVAENAGKEVKASVPVVIATDVAAANQPAIPQNAVSQAVVSQS
PASQPIASQTITSQNSEQQDNTMPRRSRRSPRHLRVSGQRRRRYRDERNLTQSPVPLKMA
VVSPELASGKVWVRYPVTPVSVVESELPVSVDVINETVEEKTAPVPQENVILVPSITESA
STTAVSHTEITDNASIVLPAEPELESVESVINYDEKHQSEVLADKVSPDSEETRHTVDSI
IVTPIVVEQEHHEEQPTVATETCAKAEEVKTEETKVIESSIIVEKNHHAYSPMTKAPAPN
RVDQPVIITEWQRPAYPFKGKGGAGGHSATSIATSAMSRPQPFE
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaacccagcaggaagagttgcgtgttgctcttgttgac
gggcaacgtctttatgatttggatattgaaagccctggacatgagcagaaaaaggcaaat
atctataaaggtaaaattacacgaattgaacctagcctggaagctgcttttgttgattac
ggtgcggaacgtcacggtttcctgcccataaaagaaattgctcgcgaatatttcccaagt
aattatcacgcccacggtcgccctaacattaaggatctccttaaagaaggtcaggaagtt
atcgtccaagttgataaagaagaacgaggcaataaaggcgctgcgttaaccacttttatc
agtttggcgggcagctatctggttctgatgccaaataacccaagggcaggcggaatttct
cgccgcatcgagggtgatgatcgtatcgaattaaaagaagcactctcttctcttgacgtc
ccagaaggaatggggcttatcgtgcgtactgcgggtgtaggcaaatctgccgaagccttg
cagggtgatttgaacttccgcctgaaacattgggaagccatcaaaaaagccgcagacaat
catcccgcccccttcctgatccatcaggaaagcaatgttatcgtgcgcgcattccgtgac
tacctgcgcccggacattggggaaattttgattgataaccccaaaatccttgatttggca
cgccagcatatcactgcactggggcgccctgattttgccagtaaaatcaaactgtacagt
ggcgaagtcccgctgttcagccattatcaaatagagtcgcaaatcgaatccgccttccaa
cgtgaagtacgtctgccttccggcggctctgtggtcattgatacgactgaagccttgaca
gcaattgatatcaactcatcccgttcaacccgtggtggtgatattgaagaaacggcgttt
aataccaatttggaagccgctgatgaaattgcccgtcaattgcgcctgcgtgaccttggt
ggcctgattgttatcgatttcatcgacatgaccccggtacgccatcaacgcgaagttgaa
aaccggctgcgtgatgcggtgcgccaagatcgcgcccgtattcaaatcggccggatttcc
cgctttggcttgctggagatgtcgcgtcaacgtttaagcccatctctgggtgaatccagc
caccatgtctgtccccgttgtagcggcaccggcacgatccgtgacaacgaatccctgtcc
ctgtccattctgcgcttaatcgaagaagaagcactgaaagaaaacacccatcaggtgcat
gcgattgttcctgtgcagattgcttcttacttactgaatgaaaaacgtcaggcagtcagc
gcgattgaacatcgtcagggcggtgttggggttgtcattgtgccaaatgatcaaatgcaa
tctccgcatttctctgttttacgtgtacgtaaaggcgaagaaatttcagctttaagctat
ttgttgccacaactgcatgaagcagaaatggcccatgttcaggatgaggttcaacatgaa
cgcaagcgtccagagcaacctgcgatttccacttttgatctgccggcagaagcagcagca
cccgcggcagtaaaagcaaaaacaaaagagaaaaaagcagtaacgactagccagaagcca
acagaagaacccggtttgttcagtcggttcttaagtgccctgaaaaagatgttcagtggc
gaagaagaaaaacagactcaggaaaggggccaaaaatcttctggcaatgataatcgccgt
ccatcagaacgtcgcaaccctcgccgccagaaccaacgccgcgaacgtaccgaaagtgat
gcacgcaacaatcgtgaacgcgatgaacagcgtaaaggccgtaatacccagcagaaaaac
aatgttcaagacagcacggcgatggataacgaagcgcgtgagacacagcagcaacgccgt
gaacagcgagctgaacgtcaacgtcgtcgtcaagaagaaaaacgtcagcagcaactggaa
accaaagctcaacagacaatccctcaacctgagatggtcgaagaagaagttgaagagcgt
cagccagttatgcctcgtcgtcaacgccgtcagcttgagcaaaaagtacgtatcactgac
gaagtgaaacaggaagctaatgttgtggccttgccagcagtgctgcctgaatcggtagca
gaaaacgccggcaaagaggtaaaagcgtctgtacccgtcgttattgctactgatgttgca
gcggctaaccaacctgcaataccacaaaatgcagtttcccaagcggttgtttctcaatca
cctgcatcacaacctattgcctcacaaactattacctcacaaaacagtgaacagcaagat
aacaccatgccgcgccgttcccgccgttctccgcgtcacctgcgtgtcagcggccagcgt
cgccgtcgctaccgcgatgaacgcaatctgacacaatcgccggtcccattgaaaatggcg
gtcgtatcaccagaactggcatcaggtaaagtgtgggttcgttatcctgtaacgcctgtc
agcgttgttgagtctgaactccctgtttctgttgatgtcattaacgaaacggttgaagaa
aaaaccgcaccggtaccacaggaaaacgtgattctggtgccgtcaatcacagaatccgca
tcaacgacagcagtgtctcacactgaaataactgataacgcttccatcgtgttacccgca
gagccggaattagaaagcgtagaatctgttatcaactatgatgaaaaacatcagtcagaa
gttttagcggataaagtatcacctgattctgaagaaacacgtcacacagtggattccatc
attgtgacgccaattgttgttgaacaggaacatcatgaagaacagccaactgtcgcaacg
gaaacatgcgctaaggcagaggaagttaaaacggaagagacaaaagttattgagtcttcg
attatcgtggaaaaaaatcatcacgcttattccccaatgacgaaggcaccggcaccaaat
agggtggatcagccagtgattatcactgaatggcaacgccctgcttatccatttaaaggc
aaaggcggtgcaggcgggcattctgcaaccagtattgcaacttcagctatgtctaggcca
cagccattcgaataa
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