Xenorhabdus doucetiae: XDD1_2514
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Entry
XDD1_2514 CDS
T03784
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
XDD1_2514 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xdo03400
]
XDD1_2514 (sbcB)
Enzymes [BR:
xdo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
XDD1_2514 (sbcB)
DNA repair and recombination proteins [BR:
xdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
XDD1_2514 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XDD1_2514 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XDD1_2514 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
DUF1122
Chromo_2
Motif
Other DBs
NCBI-ProteinID:
CDG18213
UniProt:
A0A068QTA9
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All DBs
Position
2658362..2659792
Genome browser
AA seq
476 aa
AA seq
DB search
MNTRKENQSFYFHDYETFGKHPALDRPAQFAGVRTDSDFNIIEEPLVVYCAPADDYLPDP
EAVMITGITPQLAWKNGVNEAEFARQIHAAFSKPNTCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQKGNSRWDLLDVLRACYALRPEGIVWPENEEGLPSFKLEHLTKANNVEHTQAH
DAMSDVYATIAMAKLVKKAQPKLFDYFFQLRNKQKVSNQIDIPQMKPLVHVSGMFGTLRS
NISLVAPLAWHPSNRNAVIMCDLAGDITPLLQLSAEELRERLYTRRDELRPDQSPVPIKL
VHINKCPIIAPENTLRPKDAERVGLDRNQCEQNLAILRNHPQIREKVVELFSHPDAFPES
DNVDTKLYSGFFSDADKTAMEIIRETSPQNLPALDLTFQDARIKPLLFRYRARNYPATLD
DDEQQRWLRYRQDTLTPESISQYLATIETLFIEYQSDEEKCRQLKALVNYAVQLAE
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
ttgaatacccgtaaagaaaaccagagtttctactttcacgactatgaaacctttggtaag
catccggccctggatcgccccgcacaatttgcaggagttcgcaccgacagtgatttcaat
atcattgaagagcctttggtggtgtattgtgctcccgctgatgattatcttcccgatcct
gaagccgtcatgatcacaggaattacgcctcagttagcctggaaaaatggtgtcaacgaa
gcggagttcgcccgacaaatccatgcagcgttcagcaaacccaatacctgtattcttggc
tataataacattcgttttgatgatgaagtcagccgtaatatcttttaccgtaacttttac
gatccttacgcctatagctggcagaaaggcaattcccgctgggatttgcttgatgtattg
cgtgcctgctacgccttgcgcccggaagggattgtctggccagaaaatgaggagggatta
ccgagtttcaagctggaacacctgacaaaagccaataatgttgagcatactcaggcgcat
gatgccatgtcggatgtgtatgctactatcgccatggccaaattggtgaaaaaagcccaa
cccaagctatttgattattttttccagttaagaaataaacagaaagtcagcaatcaaatt
gatatcccacaaatgaaacccctggttcatgtatcaggcatgtttgggaccctgcgcagc
aatattagccttgtcgcgcctttggcatggcatccgagtaaccgtaatgcggttatcatg
tgcgatctggccggtgatatcacgccacttctgcaactcagcgcagaggaattacgcgaa
cgcttgtatacccgacgggatgaattacggcccgatcaaagcccggtcccgattaaactg
gtgcatattaataaatgcccaattattgcaccagaaaataccttacggccgaaagatgcc
gagcgagtcggattagaccgcaaccaatgtgagcaaaatctggctatcctgcgcaatcac
ccgcaaatcagagaaaaagtcgttgaactgttttctcatccagacgcgtttcctgaatcg
gataatgtcgatacgaaactctatagcggttttttcagtgatgccgataaaacggcaatg
gaaattattcgggaaacgtcgcctcagaacttacctgccctggatttaacattccaggat
gcgcgtattaagccattgttattccgctatcgtgcgagaaactacccagcaacactggat
gatgacgagcaacaacgctggttgcgttatcgtcaggatacgttaacacccgaaagcatc
agccaatatcttgcaacgattgaaacactttttattgaatatcagtctgatgaagaaaag
tgccgtcagttaaaagcattggttaattacgccgtccaattagccgagtaa
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