Xenorhabdus doucetiae: XDD1_2953
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Entry
XDD1_2953 CDS
T03784
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo03410
Base excision repair
xdo03430
Mismatch repair
xdo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XDD1_2953 (recJ)
03430 Mismatch repair
XDD1_2953 (recJ)
03440 Homologous recombination
XDD1_2953 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xdo03400
]
XDD1_2953 (recJ)
DNA repair and recombination proteins [BR:
xdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
XDD1_2953 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
XDD1_2953 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XDD1_2953 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
CDG18652
UniProt:
A0A068QUF9
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Position
complement(3146563..3148296)
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AA seq
577 aa
AA seq
DB search
MNREIQLRRRPVADSSHLPDNIHPLLRRLYAMRGIRQADELERGAKGLLNYQSLNGIEQA
VTLLVTALHEHWRIVIVGDFDADGATSTALSMRALRAMGYRNLDYLVPNRFEDGYGLSVQ
VVDEVVKKSADLIITVDNGISSHEGVAAAHRHGIKVIVTDHHLPAETLPAADAIINPNLV
DCAFPSKALAGVGVAFYLMSALRAELRQLAWFDQQGIPLPNLAELLDLVALGTVADVVPL
DTNNRILVYQGLNRIRAGRCCAGIRALLEVSKREATKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLADDMMQARQIACELDGLNQTRREIEQGMQQEALQICDKIERTHTQLPYGLAI
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSVNGLHMRDALERLDTLHP
GLMLKFGGHAMAAGLSIEQDKFELFQRYFSELVADWMDIAQLEGVVWSDGELALGELSLE
MAEILRDGGPWGQAFAEPVFDGKFKLLQQRLVGEKHLKVMLEPLNGGPILDGIAFNIDVS
RWPDNSIKTVELAYKLDINEFRGNRDLQLLIQHIWPY
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaatagagaaatacaactccgccgccgaccagtggcggattctagccatcttcccgac
aatatccatccattattgcgccgtttatacgccatgcgcggtatccgtcaagctgatgag
ctggaacgtggtgcaaagggacttctcaattaccaatccctcaatgggattgagcaagcc
gttaccttactggtcactgcgttacatgaacattggcgtatcgtgattgtcggcgatttc
gatgcagatggcgcaaccagtacggcattgagtatgcgtgccttgcgtgcgatgggatat
cgcaaccttgattaccttgtgccaaaccgttttgaagatggttatggattaagcgttcag
gtggtggatgaagttgtcaaaaaaagcgcggatctgattatcaccgtggataatgggatc
tcatcccatgagggtgttgccgccgcacatcgacacggcatcaaagtgatcgtcacggat
caccatttaccggctgaaacattgccagccgcagacgccattatcaatcccaatttagtt
gactgcgcctttccttctaaagcgttggcaggggtgggcgtcgcattttacctgatgtcc
gcactcagggcagaattgcgtcaattggcatggtttgaccaacaaggcattccattgccc
aatctggcggaactgctggatttagtggcactggggacagtagcagatgtggttcccctc
gataccaacaaccgcattctggtctatcagggattaaatcgcattcgggcagggcgttgc
tgtgcgggaatacgagctttgctcgaagtctccaagcgggaagcgacaaaattggctgcc
agtgatttgggatttgccttggggccacgattaaatgccgccggccgtctggatgatatg
tctgtcggggtggcgttactattggctgatgacatgatgcaggctcgccaaatcgcgtgt
gagttggatggcctgaaccaaactcgccgggaaatcgaacagggcatgcagcaggaagcc
ttgcagatttgcgataaaatcgagcgcacccatactcagcttccttacgggctggccatt
taccatcccgaatggcatcagggagtcgtgggtattttggcttcacgcattaaagagcgt
tttcaccgcccggtcattgctttcgctccggcgggggatggaacgttgaaagggtcaggg
cgttccgtcaatggcctgcatatgcgcgatgcccttgagcgactcgataccctgcatccg
gggctgatgttgaagtttggcggtcatgcgatggcagcgggattgtcgattgagcaagac
aaatttgaactctttcagcgctatttttccgagctggtcgccgactggatggatattgcc
caacttgaaggcgttgtttggagcgatggtgaattagcattgggtgaattatcgttggaa
atggctgaaattctgcgtgatggtggcccgtggggtcaggcatttgcagagccggttttt
gacggcaaattcaagttactgcaacagcgcctagtgggtgaaaagcacctgaaagtcatg
cttgagccattaaatggcgggccgatattagatggcatcgcatttaacattgatgtcagc
cgctggccggataacagtatcaaaacagtagaattagcctataagctggatattaacgaa
tttcgcggtaatcgtgatctccagcttttgatccaacatatttggccgtattga
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