Xenorhabdus doucetiae: XDD1_3125
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Entry
XDD1_3125 CDS
T03784
Symbol
rumA
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase rumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
xdo
Xenorhabdus doucetiae
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xdo03009
]
XDD1_3125 (rumA)
Enzymes [BR:
xdo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
XDD1_3125 (rumA)
Ribosome biogenesis [BR:
xdo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
XDD1_3125 (rumA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
MTS
RrnaAD
Met_10
Methyltransf_15
Cons_hypoth95
DUF4770
Methyltransf_11
DOT1
Ubie_methyltran
CMAS
FtsJ
Motif
Other DBs
NCBI-ProteinID:
CDG18824
UniProt:
A0A068QVM6
LinkDB
All DBs
Position
3315387..3316724
Genome browser
AA seq
445 aa
AA seq
DB search
MVQFYSPNRRSVNRGIISVTADNLDAQGQGIARHQGKTIFISGLLPGEQAQIQLTEEKRQ
FAKARIVKRLSDSPHRVAPYCPHFNVCGGCQQQHVATELQVNTKASVLEHLIQRETGIRI
SAHPIIHSPEYGYRRRARLGLQYHAKQRTLLMGFRQSQTNDLVNIKHCPVMRPELEQLLQ
PLHQCLNRLQAVKRLGHVELVLAESGPLVVLRHLDPLKHEDKQTLRTFSLQHQVAIYLLG
DEKSLEPLMAEQAAPWYQVDGLKLVFSPQDFIQVNDGVNQQMVTQALAWLDLQPTDRVLD
LFCGMGNFTLPIATKVQAVVGVEGVAELVASGQYNARLNQLHNVDFFHANLEAEIHRQPW
AAQGFNKVLLDPARAGAAGVMAHIVKLAPEKVVYVSCNPTTLARDSKVLLEAGYHLVSVR
MLDMFPHTGHLESMALFCSEPMDIE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaattttactccccaaaccgtcgctccgtaaaccgaggcattatttccgttacc
gcagataaccttgatgcacaagggcaaggtattgcccgtcatcagggaaaaacgatcttt
atttcagggttattgccgggtgagcaggcacagatccaactgacagaggaaaaacgccag
tttgcgaaagccaggatagtgaaaaggctatcagacagcccgcatcgcgtcgcgccttac
tgtccgcactttaacgtgtgtggcggatgccagcagcagcatgttgccactgagctgcaa
gtgaataccaaggccagtgtactggaacacctgatccagcgggaaaccgggattcgcatc
agtgcacatcccatcatccacagcccagaatatggctatcggcgcagggccagattgggc
ctgcaatatcacgccaagcaacgcacattattgatgggatttcgccagagccagaccaac
gatttggtgaatattaaacactgtccggtgatgcgtcctgaattggaacaattattgcaa
ccgttgcaccagtgcctgaatcgtttgcaggcggtgaaaagactgggacatgtggagctg
gtcttggcggagagtggcccattagtcgtgttacgccaccttgatccgcttaagcacgaa
gataagcaaaccttgcgcactttttcgctgcaacaccaggtggcgatttatttattgggt
gatgagaaatcgcttgagccattgatggcagagcaagccgcgccgtggtatcaggtggat
ggattgaaactggtgttcagtccacaagattttattcaggtcaatgatggggtgaaccaa
caaatggtcacacaggcgttggcgtggctggatttgcaacccacggaccgggtactggat
ctgttttgtggcatgggaaatttcaccttgccgatagcgactaaagttcaggcggtcgtt
ggcgtggaaggggttgctgagctggtggcgagtgggcaatataacgcccggctgaatcaa
cttcataacgtcgatttttttcatgcaaatctggaagcggagattcaccggcaaccttgg
gccgcacaagggttcaataaagtgttgctggaccccgcccgcgctggcgcggcgggtgtt
atggctcatattgtaaagttagcccccgaaaaagtggtttacgtttcctgtaaccccaca
acactcgcacgggacagcaaggtcttgctggaggcgggttatcatcttgtcagtgtgcgg
atgctggatatgtttccgcacaccggccatctggaatctatggctctgttttgcagcgag
ccaatggatatcgagtag
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