Xenorhabdus doucetiae: XDD1_3162
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Entry
XDD1_3162 CDS
T03784
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
xdo
Xenorhabdus doucetiae
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xdo03016
]
XDD1_3162 (truD)
Enzymes [BR:
xdo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
XDD1_3162 (truD)
Transfer RNA biogenesis [BR:
xdo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
XDD1_3162 (truD)
Prokaryotic type
XDD1_3162 (truD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
CDG18861
UniProt:
A0A068QW41
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All DBs
Position
complement(3355582..3356631)
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AA seq
349 aa
AA seq
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MALSELHWFYGQPEATGVVKATPEDFIVREDLGFSPDGEGEHLMVHIRKTGCNTQFVADH
LARFAKIAARSVSYAGLKDRNAVTEQWFCLHLPGKQDPDLAAFQLEGCEVLATSRQKRKL
RIGALKGNDFTLVLREISDRQSVEKRLQQIAQTGIPNYFGEQRFGRDGQNIVQAQRWAAN
EIHVKERSRRSFYLSACRSAMFNAIASRRIAQGEHQQVKKGDALQLTGRGSWFVADESEL
SVLQQRVMDGELQITAPLPGDKALGTQHQALNFEQQCLLDYESLWALVKRERVESARRAI
LVKPLNLRWEWQDDQTITLHFSLPSGSFATSVVRELINQDQNKATDIAE
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggcattgagtgaattacattggttttatggtcaaccggaagcgaccggcgttgttaaa
gccacaccagaagattttattgttcgcgaagacttgggattttctccggatggagaaggt
gaacacttaatggtacatatccgtaaaacgggatgtaacacccaatttgtcgcggatcat
cttgcccgttttgccaaaatagcggcgcgctctgtcagctatgcgggattgaaagatcgt
aatgccgtgacggaacagtggttttgcctgcatttgccgggaaaacaagatccggactta
gcggcatttcaacttgaaggttgtgaagtactggcaacgtcccgccagaaacgcaaacta
cggattggtgcattgaagggcaatgatttcacgctggtattaagggaaatctctgaccgg
caatcggtggaaaaacgcttacagcagatcgcgcaaaccggcatccccaattactttggt
gaacagcgtttcggacgggatgggcaaaatatcgttcaggcacaacgctgggcggccaat
gaaattcatgtcaaagaacgcagccgccgcagtttttacctttctgcttgccgtagcgct
atgtttaatgccattgccagccgacgtatcgcacagggtgaacatcagcaggtaaaaaaa
ggtgatgcgttacaattaaccgggcgtggtagctggtttgtggcggatgaatctgaattg
tcggtgttgcagcagcgagtcatggatggcgagttacaaatcaccgcgcctttaccggga
gacaaagcgttgggcacgcagcatcaggctctgaatttcgagcagcagtgtttattggat
tacgaatcgctttgggcattggtcaaacgtgaacgcgtggagagcgcccgtcgggcaata
ttggtgaaaccgcttaatctgcgttgggaatggcaagatgaccaaaccatcacccttcat
ttctctctgccatccggtagctttgcaaccagtgtggtcagagaacttatcaatcaggat
caaaataaggcgacggatattgcagaataa
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