Xenorhabdus doucetiae: XDD1_3291
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Entry
XDD1_3291 CDS
T03784
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo03030
DNA replication
xdo03430
Mismatch repair
xdo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XDD1_3291 (dnaE)
03430 Mismatch repair
XDD1_3291 (dnaE)
03440 Homologous recombination
XDD1_3291 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xdo03032
]
XDD1_3291 (dnaE)
03400 DNA repair and recombination proteins [BR:
xdo03400
]
XDD1_3291 (dnaE)
Enzymes [BR:
xdo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XDD1_3291 (dnaE)
DNA replication proteins [BR:
xdo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XDD1_3291 (dnaE)
DNA repair and recombination proteins [BR:
xdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XDD1_3291 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CDG18981
UniProt:
A0A068QWD7
LinkDB
All DBs
Position
complement(3484123..3487605)
Genome browser
AA seq
1160 aa
AA seq
DB search
MTEPRFVHLRVHSDYSMIDGLAKTGPLVKKVAKLGMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFYVENDLLGDEYAHLTILARNNEGYQNLTLLISEAYQKGYGAIGPTIKREW
LVKYKTGLILLSGGRMGDVGKFLLRGNRVMVEQCLNFYQEHFPDSYYLELIRTGRLDEEN
YLHAAVALAVEKNLPVVATNDVCFLESEDFDAHEIRVAIHDGYTLSDPKRPKNYSPQQYL
RSEQEMCELFSDIPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGEMSTEDFLVEKSKQGL
EERLAFLYPEPEIRAQKRPAYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTRITDFAPIYCDPEGQNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMVNARRAKKGLEPIDIAAIPLDDQKSFDML
QRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
LSYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFEEGAIKQGVGGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAMLEARQKEGHFKELFDLCARVDIKKINRRVMEKLIMSGAFDRLGPHRAALMS
SLEGALKAADQHAKAEATGQTDMFGVLAEEPEQVERSYASTPKWPDQVVLDGERETLGLY
LTGHPITGYLKEIERYTNGLRLKDVNPTPRGQVTTVVGLVLASKIVTTKRGNRIGISTLD
DRSGRLEIMLFSDALERYQHLLEQDKILIATGQVSFDDFSGGLKMTVRELMDISEAREKF
ARGLAISLSDRQIDEQLLNRLRGALEPHRSGTMPVHLYYQRVDARARLRFGATWRVTPTD
TLLTDLRTLLGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaccacgttttgtacacttacgtgttcacagcgattattcaatgattgatggc
ttggccaagactggcccgttggtgaaaaaagtcgccaaattgggcatgccagctttggcg
atcacggattttaccaacttatgtggattggtgaagttctatggcagtgcccacggtgcc
ggtattaagcccattattggggcagatttttatgtggaaaacgatttgttgggggatgaa
tatgcccatctgacaatcctggcccgcaataatgaaggttatcaaaacctgaccttgctg
atctcagaggcttaccaaaaagggtacggtgcgattggccccaccatcaagcgggaatgg
ctggtaaaatataaaaccggtctgatcctactgtcaggcgggcgcatgggcgatgtgggt
aaattcctgttgcgtggcaaccgtgtgatggtggaacaatgtctcaatttttatcaggaa
catttccctgacagctattaccttgagttgatccgtaccgggcgtctggatgaagaaaat
tatcttcatgcggcggtggcactggcagtagaaaaaaatcttcccgttgtggccactaat
gatgtctgctttctggaaagcgaagatttcgacgcccacgagattcgggtggctatccat
gatggttatacgctgtctgatccgaaaaggcctaaaaattacagccctcagcaatatctg
cgcagtgaacaggagatgtgcgagcttttctcagacattcctgaagcgctacaaaatagc
gtagaaattgctaaacgctgtaatgtcaccatccgtctcggtgagtatttcctgccgcag
ttcccgacaggagaaatgagcacggaagattttctcgttgaaaaatccaaacaagggctg
gaggagcgtctggcgtttctctatcccgaaccggaaatcagggcgcagaaacgcccggcc
tatgatgaacgccttgatattgagctgaacgttatcaaccaaatgggatttccgggttac
ttcctgatcgtgatggaatttatccagtggtcgaaagacaatggtgttcccgttggtccg
gggcgtggttccggtgccggttctctggtggcttacgcattaaaaattaccgatctcgat
ccgctggaattcgatctgctgtttgaacgtttcctgaaccctgaacgtgtttccatgcct
gactttgacgtcgatttttgtatggaaaaacgtgatcaggttatcgatcacgttgccgat
atgtacgggcgggatgccgtatcgcagattatcacgtttggtacgatggcggcgaaagcg
gttatccgcgatgttgggcgtgtccttgggcacccttatgggtttgttgatcgcatatca
aagctggtaccgcctgatccgggcatgacgttggaaaaagcctttgccgccgagccacag
ctacctgaaatttacgaggcagatgaagaggttaaggcgctgatagacatggcgcgcaag
ctggaaggtgtcacgcgtaacgccggtaaacatgcgggcggtgtggttattgcgcccacc
aggattacggattttgccccgatttactgtgatcccgaagggcaaaacccggttacccag
tttgacaaaaacgatgtggaatatgccggtctggttaagtttgacttccttggcctgaga
accctgaccattatcaactgggcacttgagatggtgaatgcccgtcgtgccaaaaaaggg
ctggagccgattgatatcgcggctattccgctggatgatcagaaaagtttcgatatgctg
caacgttctgaaacgacggccgtgttccagcttgaatcccgcgggatgaaggacttgatc
aaacgcctgcgtcccgactgttttgaagacatgatcgcattggtggcactgttccgtccg
gggccgttgcaatccggcatggtagataactttatcgaccgtaaacatgggcgggaagag
ctctcttaccctgacgttgaatggcagcatgaatccttgaaacccgtcctggaaccgact
tacggtatcattctgtatcaggaacaggtgatgcagattgcacaggttctggcaggttat
acccttggcggggcagatatgctacgtcgtgcaatgggtaagaaaaaacccgaggagatg
gctaaacagcggtcagtctttgaagaaggggcgataaaacagggcgttggtggcgaactc
gccatgaagatcttcgatttggtggagaaattcgcgggttatggctttaacaaatcgcac
tccgccgcttatgcactggtttcttatcagacgttatggctgaaagcgcactatccggca
gaatttatggctgctgtgatgaccgcggatatggataacaccgaaaaagtcgttgggctg
gtggatgagtgctggcgcatgggattgaaagtgttgcccccggatatcaatagcggttta
tatcatttccacgtcaatgatgacggagaaatcgtttacggtatcggtgcgattaaaggt
gtgggggaagggccgattgaagcgatgctcgaagcccgacagaaagaaggtcactttaag
gagctgttcgacctgtgcgcccgtgttgatattaaaaaaatcaaccgccgggtaatggaa
aagctgattatgtccggagcctttgaccggctggggccacaccgtgcggcactgatgtcc
tctttggaaggggcactgaaagccgcggatcaacatgctaaagcggaagcgacgggtcaa
acggatatgtttggtgtgttggccgaagaacccgaacaggttgagcgttcctatgccagt
acgccaaaatggccggatcaggtggtcttggatggtgagcgggaaacactgggcttgtat
ttaaccggccacccgatcacgggttatttaaaagagattgaacgatataccaatggattg
cgtctaaaagatgtgaacccgacacctcgtggtcaagtcacaactgtggtaggtttggtg
ctagcgtccaaaatcgtgacaaccaaaaggggaaaccggatcgggatcagcacattggac
gatcgttcagggcgtctggagatcatgctgttttctgatgcgttggaaaggtatcagcat
ttattggaacaggacaagattttgattgccaccgggcaagtcagctttgatgactttagc
ggtgggcttaaaatgacagtgcgtgaattaatggatatcagtgaagcccgtgaaaaattt
gcacgtgggcttgctatctcgttatcagacaggcaaattgatgagcaattattgaaccgt
ctccgtggtgcattggagccacaccgttcaggaacgatgccggttcatctttattatcag
cgggtagatgcccgcgcccgtttacgattcggtgcaacctggcgggtaacgccaacagac
acccttttgaccgatctgcgaactctgctgggtaatgagcaggtagaattagaatttgac
tag
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