Xanthomonas dyei: NYR95_03950
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Entry
NYR95_03950 CDS
T09460
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
xdy
Xanthomonas dyei
Pathway
xdy00550
Peptidoglycan biosynthesis
xdy01100
Metabolic pathways
xdy01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NYR95_03950 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
NYR95_03950 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xdy01011
]
NYR95_03950 (mrdA)
Enzymes [BR:
xdy01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
NYR95_03950 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
xdy01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
NYR95_03950 (mrdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PBP_dimer_2
Motif
Other DBs
NCBI-ProteinID:
WOB54755
LinkDB
All DBs
Position
923276..925336
Genome browser
AA seq
686 aa
AA seq
DB search
MHGRRQPKNPHAEAEQFRRRAVLGFVMVVICLVGLGGWYFKLQVLDHEVYATRSEANRIK
PKPVVPGRGMIYDRTGRLLAENVPAFRLDVTPDKVADMDAMLAALGKVIPIAPEDLERFN
RERRARRSFLPVTLKLRMSDEEMARFAVERWRFPGVELEPYLTRRYPYGPLFAHIIGYVG
RIDEKDLAVLGEGNAALTHMGKSGLERYYEQDLRGQVGYEQVETNVQGRAIRTVGRVAPQ
SGADLRLSVDADLQRAMVAAFGEHEGAAIAMDPRTGEILGMVSLPSYDPNLFVNGISHTD
FKMLNDNPSRPQFNRLVLGGVAPGSTLKPLIALAGLDSGLRRPEDRVLSTGMFYLPGVSR
GWGDSHRGGHGWTDLRKSIAQSVNTYYYRLAVDMGIERFDHYMGGYGFGAPTGLDLLGEI
GGILPSPAYKYKTRKERWYPGDTVNIAIGQGDWKVTPLQLVRGISAIASGLLLRPHLVLE
ERTGFDHPWQPMIQPPGKPISPNPAHLQVVREGMMDTMRPGGTGYAITPGAPYQMAGKTG
TAQVVSRKGVAAVDPRSLPMHLRHRGLFVGFAPADNPVIAVAVAVEGGGFGTSSAAPIAR
KIFDAWLLGKMPAGILPLDSELGMTAVGINQFEAGATDARAAGDAAAATLEELPVVIGQT
AVALDPSTPAQPVVPDVPDAVQETDH
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgcacggtcggcgccaacccaagaatccgcatgccgaggccgagcagttccgccgccgg
gcggtgctggggtttgtgatggtggtgatctgcctggtcggcctgggcggctggtatttc
aagctgcaggtgctcgaccacgaggtctacgccacgcgctcggaagccaatcgcatcaag
cccaaaccggtggtacccgggcgcggcatgatctacgaccgcaccggccggttgctggcc
gaaaacgtgccggcgttccggctggacgtgaccccggacaaggtcgccgacatggacgcc
atgctggccgcgctgggcaaggtgatcccgatcgcgccggaggatctggaacgcttcaac
cgtgagcgccgcgcgcgccgcagcttcctgccggtcaccctcaagctgcgcatgagcgac
gaagagatggcgcgctttgcggtggagcgctggcgcttccctggcgtggagctggagccg
tatctgacccggcgctacccctacgggccgctgttcgcgcacatcatcggctacgtcggc
cgcatcgacgaaaaagacctcgcggtgctgggcgagggcaacgccgcgctcacccatatg
ggtaagtccggcctggagcgctattacgaacaggacctgcgcgggcaggtgggctacgag
caggtcgagaccaacgtgcaggggcgggcgatccgtaccgtcggccgcgtcgcgccgcag
tcgggtgcggatctgcggctgtcggtggatgccgatctgcagcgcgcaatggtggcggcg
ttcggcgaacacgaaggtgcggccattgcgatggatccgcgcaccggcgagatcctgggc
atggtcagcctgcccagctacgaccccaatctgttcgtcaatggcatctcgcataccgac
ttcaagatgctcaacgacaatccgtcgcggccgcagttcaaccggctggtgctcggtggc
gtggcgccgggctccacgctcaagccgctgatcgccttggccggcctggatagcggcctg
cgccggccggaagaccgggtgttgtccaccggcatgttctatctgcccggcgtcagccgc
ggctggggcgactcgcaccgtggcggccacggctggaccgatctgcgcaaatccatcgcc
cagtcggtcaatacctactactaccgcctggcggtggacatgggcatcgagcgcttcgac
cactacatgggcgggtacggcttcggcgcgcccaccgggctggatctgctgggcgaaatc
ggcggcatcctgccgtcgccggcctacaagtacaagacccgcaaggagcgctggtacccc
ggcgacaccgtcaacatcgccatcggccagggcgactggaaagtgacgccgttgcaattg
gtgcgcggcatctcggcgatcgccagcggcctgctgctgcgcccgcatctggtgctggaa
gaacgcaccggcttcgatcacccctggcagccgatgatccagccgccgggcaagccgatc
agcccgaatccggcgcatctgcaagtggtgcgcgagggcatgatggacaccatgcgcccc
ggcggtaccggctacgccatcacgcccggcgcgccgtatcagatggccggcaagaccggc
accgcgcaggtggtcagccgcaagggcgtggccgccgtggacccgcgcagtctgccgatg
cacctgcgccaccgcggcctgttcgtcggctttgcgccggccgacaacccggtcatcgcg
gtggcggtggcggtggagggcggtggcttcggtaccagctcggcagcgccgatcgcacgc
aagatcttcgacgcctggctgctgggcaagatgcctgcgggcatcctgccgctggacagc
gaactcggcatgaccgccgtgggcatcaaccagttcgaagccggtgccaccgatgcacgt
gcggccggtgatgcggccgccgccacgctggaagaattgccggtggtgatcggccagacc
gccgttgcgctggatcccagcacgcccgcgcagccggtggtaccggatgtgccggatgcg
gtgcaggagaccgatcattga
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