Xanthomonas dyei: NYR95_08020
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Entry
NYR95_08020 CDS
T09460
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
xdy
Xanthomonas dyei
Pathway
xdy02020
Two-component system
xdy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NYR95_08020
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NYR95_08020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xdy03021
]
NYR95_08020
Transcription machinery [BR:
xdy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NYR95_08020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_AsnC-type
HTH_Crp_2
HTH_38
HTH_IclR
Sigma70_r4
HTH_23
Sigma70_r4_2
HTH_11
TSP9
MarR
Motif
Other DBs
NCBI-ProteinID:
WOB55473
LinkDB
All DBs
Position
complement(1842842..1844239)
Genome browser
AA seq
465 aa
AA seq
DB search
MTPQLRQAIKLLQMSTTELELEIAEAVETNPLLEWADEAAHAAGDTAVESASSSSSEEPQ
REEPAPAERDDDWSQDELQWTGSGSGGSFDDDESGDAAERVAESETLADHLLWQLHLSPL
SPRDRQIGALLIDALDEDGYLREPLSAILETLALGAAVDEAEVLTVLHQIQRFDPVGVGA
RTLGECLTLQLAVLDPAIPGRELALQIVAGPLERLPRAGVPGLAHELKRSAADVEQAVQL
VRSLDPRPGKQIGDLSQDTYVVPDCVIWRQRGVWRASLAGRSQPKVTIHRGYENLIRSCG
ESDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAG
ELGLHESTISRAIARKYVRTPRGTIALRSFFASGIDTDSGGEASSTAIQAMIRRLIDAEN
PRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgcaattgcgtcaggcgatcaagctattgcagatgtccaccaccgagctggaa
ctggaaatcgccgaagcggtggaaaccaacccgctgctggaatgggccgacgaagccgcg
catgcggccggcgacacagcggtggagtccgcgtcgtcctcgtccagcgaggaaccccag
cgcgaagaaccggcgcctgccgaacgcgacgacgattggtcgcaggacgaattgcagtgg
accggctcgggcagcggtggcagtttcgacgatgacgagtccggcgatgccgccgagcgc
gtggccgaatcggaaaccctggccgaccatctgctgtggcaactgcacttgtcgccgttg
tcgccacgcgaccgccagatcggcgcgctgctgatcgatgcgctggacgaagacggttat
ctgcgcgagccgctgtcggccattctcgaaacactggcgctgggcgctgcggtggacgag
gcggaagtactgaccgtgctgcatcagatccagcgtttcgacccggtcggcgtgggtgcg
cgtacgctgggcgagtgcctgaccttgcagctggcggtgctcgacccggccatccccggg
cgcgagctggcgctgcagatcgtcgccggcccgctggaacggctgccgcgtgccggtgtg
cccggcctggcgcacgaactcaagcgctcggccgccgatgtcgaacaggccgtgcagcta
gtgcgttcgttggacccgcgcccgggcaagcagatcggcgacctgtcacaagacacctac
gtggtgcccgactgcgtgatctggcgccagcgcggcgtctggcgcgcgtcgctggccggc
cgctcgcagcccaaggtcaccatccatcgcggctacgagaacctgatccgcagctgcggc
gaatccgacgccggctacctgcgtgggcaattgcaggaggcgcgctggctgctcaagagc
ctggaagcccgcggcgaaaccctgctgcgggtggtgcgctgcctgttgcagcaccaggcc
gggtttctggaattcggcgcgcaggcgctgcgcccgctgaccctgcgcgagatcgcaggc
gagctcggcctgcacgaatccaccatttcccgcgccattgcccgcaaatacgtgcgcacc
ccgcgcggcaccatcgcgctgcgctcgttctttgcctccggcatcgacaccgacagcggc
ggcgaagcgtccagcaccgccatccaggccatgatccggcgcttgatcgacgcagaaaac
ccgcgcaaacccttgtcggacgccaagttggcagatctgttgaagacttccggcgtacca
gtggcgcggcgcaccgttgcgaagtatcgtgaggccatgaacatttccgcctcccacgaa
cgcgtacgcatcgcctga
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