Xanthomonas dyei: NYR95_09480
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Entry
NYR95_09480 CDS
T09460
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xdy
Xanthomonas dyei
Pathway
xdy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NYR95_09480 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xdy03400
]
NYR95_09480 (sbcB)
Enzymes [BR:
xdy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
NYR95_09480 (sbcB)
DNA repair and recombination proteins [BR:
xdy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NYR95_09480 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NYR95_09480 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NYR95_09480 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WOB55737
LinkDB
All DBs
Position
complement(2156811..2158256)
Genome browser
AA seq
481 aa
AA seq
DB search
MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIDEPISFFVQPADDLLPSPYATMV
TGITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER
EWRGGNSRWDLLDVLRLVHALRPDGITWPQREDGATSFKLEHLADANAVREGDAHEALSD
VYATIGMARKFQQHQPKLWEYALRLRDKRFAASLLDVIAMEPVLHISQRYPASRMCAAAV
LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDEIADRLYIRAADLPDGEQRIPLKEVHLNK
SPALVAWQHLRAPDFQRLGVDPDAVLAKAARLRELGPQLAEKVRQVYGNERAAAPAVNDA
DASLYDGFLAEGDKRLLAQVRASAPDELGALETRFRDPRLIELLFRYRARNWPQTLSFDD
QERWNQYRRKRLLEDHGLGEVTLDQYNAQIADLRLAHPDDATKQALLDQLAAWGSDLKRT
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacagctttctcttctacgacctggaaaccttcggccaggacccgcgccgcacc
cgcatcgcgcagttcgccgccgtgcgcaccgacgcgcaactgcgcgtgatcgacgagccg
atcagtttcttcgtgcaaccggccgacgacctgctgccctcgccgtacgccaccatggtc
accggcatcaccccgcagcacgcgctgcgcgaaggcgtgaccgaagccgaagcgtttgcg
cgcatcgccgagcagatgagtcgcccgcagacctgcacgctgggctacaactcgatccgc
ttcgacgacgagttcgtgcgctgcgggctgttccgcaatttctacgatccctacgagcgc
gagtggcgcggcggcaattcgcgctgggatctgctcgatgtgctgcggctggtacacgca
ttgcgcccggacggcatcacctggccgcagcgcgaagacggcgccacctcgttcaagctc
gaacatctggccgatgccaacgcagtgcgcgaaggcgatgcgcatgaggccttgtccgac
gtgtacgccaccatcggcatggcgcgcaagtttcagcagcatcaacccaagttgtgggag
tacgcgttacgcctgcgcgacaagcgctttgctgccagcttgctcgatgtgatcgcgatg
gaaccggtgctgcacatttcgcagcgctacccggcctcgcgcatgtgcgccgccgccgtg
ctgccgctgacgcggcatccgcgcatcgacagccgcgtgatcgtgttcgatctggacggc
gacccggaggtgttgttgcggctaagccccgatgagatcgccgaccggctgtatatccgc
gccgccgatctacccgacggtgagcagcgcatcccgctcaaggaagtacatctgaacaag
tcgccggcgctggtggcctggcagcatctgcgcgcgccggatttccagcgcctgggcgtg
gaccccgatgcggtgcttgccaaggctgcacggctgcgcgaactgggcccgcagctggca
gagaaggtgcgccaggtctacggcaacgaacgtgccgcggcgccggccgtcaacgatgcc
gatgcctcgctctacgacggctttctggccgaaggcgacaagcgcctgcttgcccaggtg
cgcgccagcgcgccggacgaactgggcgcgctggaaacacggtttcgcgacccacgcctg
atcgagctgctgtttcgctatcgcgcacgcaactggccacagacgctgtcattcgacgat
caggaacgctggaaccagtaccgccgcaagcgcctgctcgaagaccatgggttgggcgaa
gtcaccctggaccagtacaacgcgcagattgcggatttacggctcgctcaccccgacgat
gctaccaagcaagccctgctcgaccagctcgccgcctggggttcggacctcaaacgcacg
ctatga
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