Xanthomonas dyei: NYR95_16470
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Entry
NYR95_16470 CDS
T09460
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xdy
Xanthomonas dyei
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xdy03019
]
NYR95_16470 (hrpA)
Enzymes [BR:
xdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NYR95_16470 (hrpA)
Messenger RNA biogenesis [BR:
xdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NYR95_16470 (hrpA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
AAA_30
SRP54
NACHT
AAA_25
ResIII
nSTAND_NTPase5
Cas3-like_C_2
T2SSE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WOB52950
LinkDB
All DBs
Position
complement(3771706..3775821)
Genome browser
AA seq
1371 aa
AA seq
DB search
MSAIDTDLATLLRERRNAVDGAMSRDRGRLLGLWSRWQGKPGNPQLREAFEQALAASLAQ
RQARAEQQPAITLDTHLPIAREAERIIGLIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVADELKTPLGTVVGFQVRFTDRVSEQSRIKFMTDGILLA
EIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLKKRPDLKLIVTSATIDTERFAQH
FDNAPVINVEGRTFPVEVRYRPLEGESGGDDAQDAGRDGERSVNDAIVAAIDEITRIDPR
GDVLMFLPGEREIRDAHHSLERRKYRETEVVPLYARLSAADQDRVFNPGPRRRLVLATNV
AETSLTVPRIRYVVDPGFARVKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGICYR
LYAEADFAARPAFTDPEIRRASLSGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQLL
ELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQRGCLREMIVIAAFLGIQDPRERPP
EAREAADNAHAVFADARSEFVGILRLWDAYRQVHEDLTQSKLRDWCNRHFLGFLRMREWR
ELHRQLRLLCEELGWSEEPANVMLAPLLAGASAPAREDGHNANRPTRGQLHRAARLAREG
KPDPTAPPTQSAAAASNKQAETAEGSARASERERAAAYQSLHRALLAGLPTQIGHRTEKG
DFLAARQRRFVPFPGSALARKPPPWMLAATLLDTQKVWGMTNAAIEPDWAIAELPHLLAR
KHFDPHWSRAQGQVVASEQISLFGLVLAPKKPVHFGKIDPAAAHDLFVRQALVTGEINTR
AAFVADNLKVLEQAREEEAKLRRAGIVADEGWQARWYLDRIPAELHSASGLDAWWKTLPP
DKRRSLRWTLNDLLPGEGSEADRFPKYFPLGDARLPLQYRFEPGAIDDGVTLDVPLHLLN
ALDPARLSWLAPGFVADKASALIRSLPKVQRRNFVPAPDFGRAFYEAYSLPSADDIRGEL
ARFLSKATGVQVAALDFDEESLDTHLLMNLRLRDDDGKVLAESRDLDGLRAHFGERAGQA
FAARAGRALAAEGLRDFPATPIPEQVAGEAGVPAYPALVDQGEDAALRIFADRNDAAQAH
PRGVRRLLEIALADKIKHARKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLADGLG
AIRDPGAFAQRRDDATKRLFGEAMERLKLAESILGAVAELKPLLEAPLMGWARGNLDDME
QQLRALVHAGFLRETPAEALANYPRYLKAMILRTERAKRDPARDQSRMLELKPFVDALGD
AAARGLQQRADWQALRWDLEELRVSVFAQELGARSGVSAKKLSQRVAALRG
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgacaccgaccttgccacgctgctgcgtgagcgccgcaacgccgtggat
ggcgcaatgagccgagaccggggccgtttgcttggcctatggtcgcgctggcagggcaaa
cccggcaacccgcagctgcgcgaggcgttcgagcaggcgttggcagcgtcgctggcgcag
cgccaggcgcgtgccgagcagcagccggcgatcacgctggacacgcacctgccgatcgca
cgcgaagccgagcgcatcatcgggttgatccgcgatcatcaggtggtggtcatcgctggc
gaaaccggctccggcaagaccacccagctgcccaagttgtgtctggccgccgggcgcggc
gccgcgggcatgatcggttgcacccagccgcgccggattgccgcgcgtgcggtggccgcg
cgggtggccgacgagctgaagacgccgttgggcaccgtggtgggcttccaggtgcgcttc
accgaccgggtgagcgagcagtcgcgcatcaagttcatgaccgacggcatcctgttggcg
gagatcgccagcgaccgctggttgtcggcctacgacaccatcatcgtggacgaggcgcac
gagcgcagcctcaacatcgacttcctgctcggctacctcaagcagctgctgaaaaaacgc
cccgatctcaagttgatcgtgacctcggccaccatcgataccgagcgctttgcgcagcat
ttcgacaatgcgccggtgatcaatgtggaagggcgaactttcccggtcgaagtgcgctac
cgcccgctcgaaggcgaaagcggcggcgacgatgcgcaggatgccggccgcgacggcgag
cgcagcgtcaacgatgcgatcgtggcggcaatcgacgagattacccgcatcgacccgcgc
ggcgatgtgctgatgttcctgccgggcgagcgcgagatccgcgatgcgcatcattcgctg
gaacggcgcaaataccgcgagaccgaagtggtgccgctgtatgcgcggctgtcggcggcc
gaccaggaccgcgtgttcaaccctggcccgcgccggcgtctggtgctggccaccaacgtg
gccgaaacctcgttgacggtgccgcgcatccgctatgtggtggacccgggctttgcgcgc
gtcaagcgctacagcccgcggcagaagctggaccgcctgcatatcgagccgatctcgcag
gccagcgccaatcagcgcatgggccgttgcgggcggatcgccgaagggatttgctaccgg
ctgtatgccgaagcggacttcgccgcgcggccggcgtttaccgacccggaaatccggcgc
gcgtcgttgtcgggcgtgatcctgcgcatgctgcaactggggctggggcggatcgaagac
ttcccgtttctggaagcgcccgacgagcgcgcggtggccgatgggtggcagcagctgctg
gagctgggcgcgatcgacgccgagcgccgtctgaccgccatcggtcggcagatggcgcgc
ctgccggtggacgtcaagctggcgcgcatgctggtggccgcgcagcagcgcggctgcctg
cgcgagatgatcgtcatcgccgcgttcctgggcatccaggacccgcgcgaacgcccgccg
gaagcgcgcgaggcggccgacaatgcgcatgcagtgtttgccgatgcgcgctcggaattc
gtcggcatcctgcgcctatgggatgcgtaccggcaggtgcacgaagacctcacccagtcc
aagttgcgcgactggtgcaaccggcattttctgggctttttgcgcatgcgcgaatggcgc
gagctgcatcggcagttgcgcctgttgtgcgaagaactcggctggagcgaagagccggcc
aacgtgatgctggcgccgctgctggcgggcgccagtgcgcctgcgcgcgaggatggccat
aacgccaaccggccgacgcgcgggcagctgcatcgcgccgcgcgtcttgcgcgcgaaggc
aaacccgatccgactgcgccaccgacgcaatccgctgcggcggcgtcgaacaaacaggcc
gagaccgcggaaggctcggcgcgtgcgagcgagcgcgaacgcgctgccgcgtaccaatcg
ctgcatcgcgcactgttggcgggcctgcccacgcagatcggccatcgcaccgaaaagggc
gacttcctggcggcgcggcaacgccggttcgtgccgttcccgggttcggcattggcgcgc
aagccaccgccgtggatgcttgcggcgaccttgctggacacgcaaaaagtgtggggcatg
accaacgccgcgatcgagccggattgggccatcgccgagttgccgcacctgctggcacgc
aagcatttcgacccgcattggtcgcgcgcccaagggcaggtggtggcctcggagcagatc
agcctgttcgggctggtgctggcgccgaagaagccggtgcatttcggcaagatcgacccg
gccgccgcgcacgatctgttcgtgcggcaagccctggtgaccggcgaaatcaatacgcgt
gcggcgtttgtggccgacaacctcaaggtgctggaacaggcgcgcgaggaagaggccaag
ctgcgccgtgccggtatcgtggccgacgaaggctggcaggcgcgctggtatctggaccgc
attccggccgagctgcattcggccagcgggctggatgcgtggtggaaaaccttgccgccg
gacaaacgccgcagcctgcgctggaccttgaacgatctgctgcccggcgaaggcagcgaa
gccgatcgtttcccgaagtatttcccgcttggcgatgcgcggctgccgttgcagtaccgc
ttcgagccgggtgcgatcgatgacggcgtcaccctggacgtgccgctgcacctgctcaat
gcgctggaccctgcgcgcctgtcatggctggcgcccggctttgtcgccgacaaggcatcg
gcgctgatccgcagcctgcccaaggtgcagcggcgcaattttgtgccggcgccggatttc
gggcgtgcgttctacgaggcctacagcctgccgtcggccgacgatatccgtggcgagctg
gcgcgctttctgtccaaggccaccggggtgcaggtcgccgcgctggatttcgatgaagaa
tcgctggacacgcatctgctgatgaacctgcgtctgcgcgacgacgacggcaaggtgctg
gccgaatcgcgcgatctggacgggctgcgtgcgcactttggcgaacgcgccgggcaggcg
tttgctgcgcgtgccgggcgcgcactggctgcagaaggactgcgcgatttccccgccacg
ccgattcccgaacaggtcgccggcgaggccggtgtgccggcgtacccggccctggtagat
cagggcgaggatgctgccttgcgcatctttgccgaccgcaacgacgccgcgcaggcgcat
ccgcgcggcgtgcgtcgcctgctggaaatcgcgctggccgacaagatcaaacacgcgcgc
aaacagttgccggtctctcccaaaaccggtctgctgtatgcggcgatcgaatcgcaggag
cgcctgcgtggcgatctggtcgatgccgcgctcaatgcggtgctggccgatgggctgggc
gcgatccgcgacccgggtgcgtttgcgcaacgtcgcgacgatgcgaccaagcgcctgttc
ggcgaagcgatggagcggctcaaattggccgagagcatcctgggcgccgtggccgagctc
aaaccgttgctggaagcgccactgatgggctgggcacgcggcaatctggacgatatggag
cagcagttgcgcgcgctggtgcatgcgggctttctgcgcgagacacctgccgaggcgctg
gccaattatccgcgctatctcaaggcgatgatcctgcggaccgagcgtgccaagcgcgac
ccggcgcgcgatcagtcgcgcatgcttgagctcaagccgtttgtggatgcgttgggcgat
gcggctgcgcgtggcttgcagcagcgtgccgactggcaggcgctgcgctgggatctggaa
gagttgcgggtttcggtgttcgcgcaggagctcggtgccaggtccggcgtgtcggcaaag
aaattgtcgcagcgggtggcggcgttgcgcggctga
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