Xanthomonas dyei: NYR95_18930
Help
Entry
NYR95_18930 CDS
T09460
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xdy
Xanthomonas dyei
Pathway
xdy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NYR95_18930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xdy03019
]
NYR95_18930
Enzymes [BR:
xdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NYR95_18930
Messenger RNA biogenesis [BR:
xdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NYR95_18930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
WOB53372
LinkDB
All DBs
Position
4371487..4372872
Genome browser
AA seq
461 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSAGPRQANAGAGAGRRDSRGGAGRPANRGA
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tatgaaacccccactgcgatccagcagcaggcgatcccgctggtgctggccggtcacgac
ctgctggccggcgcgcagaccggtaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggcaccaccccgcagccggtcaatggcccgcgcaagccgcgcgcgctgatc
ctgaccccgacccgcgaactggctacccaggtgcacgacagcctgcgcggctatagcaag
tacctgcgcattcccagcgcggtgatctacggcggcgtgggcatgggcaaccagctcgac
accctgcgtcgtggcgtggacctgctgatcgcctgcccgggccgtctgatcgaccatatc
gagcgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgaccgc
atgctcgacatgggctttttgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgtcagaccctgctgttctcggccacgttcgaagagaacatcaagcagctggcgctg
gagttcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcacccaccgcgtgcacccggtcgatggcgcgcgcaagcgcgatctgctgctgcacctg
ttggcgcaggacagccgcgagcagaccctggtcttcgcgcgcaccaagcatggcagcgac
aagctggcgctgttcctggaaaagtccggcatcaagaccgcggcgatccacggcaacaag
agccagggccagcgcatgcgtgcactgagcgacttcaaggccggccgcgtcaccgtgctg
gtggccaccgatatcgccgcacgcggtatcgatatcgaccagctgccgaaggtcatcaac
tacgatctgccgatggtggccgaggactacgtgcaccggatcggccgtaccggccgtaac
ggctccaccggcgaggcgatttcgctggtggcgcaggacgaagccaagctgctgcgtcag
atcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgctggggtaatagcgccccgggccgtgccgaacagccgggcggcgatcgc
gcaccgcgcaagagccacgcgcgtcgtccgcacggcgatgcaccgcgtcaggcgcatgcg
catgccggcccgaagaagccgggtggccagcgcagtgccgggccgcgtcaggccaatgcg
ggcgcaggtgccggccggcgcgacagccgtggcggggctggccgtccggccaaccgcggc
gcctga
DBGET
integrated database retrieval system
