KEGG   Xanthomonas dyei: NYR95_19170
Entry
NYR95_19170       CDS       T09460                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
xdy  Xanthomonas dyei
Pathway
xdy00010  Glycolysis / Gluconeogenesis
xdy00020  Citrate cycle (TCA cycle)
xdy00260  Glycine, serine and threonine metabolism
xdy00280  Valine, leucine and isoleucine degradation
xdy00310  Lysine degradation
xdy00380  Tryptophan metabolism
xdy00620  Pyruvate metabolism
xdy00630  Glyoxylate and dicarboxylate metabolism
xdy00640  Propanoate metabolism
xdy00670  One carbon pool by folate
xdy00785  Lipoic acid metabolism
xdy01100  Metabolic pathways
xdy01110  Biosynthesis of secondary metabolites
xdy01120  Microbial metabolism in diverse environments
xdy01200  Carbon metabolism
xdy01210  2-Oxocarboxylic acid metabolism
xdy01240  Biosynthesis of cofactors
Module
xdy_M00009  Citrate cycle (TCA cycle, Krebs cycle)
xdy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
xdy_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
xdy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
xdy_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:xdy00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    NYR95_19170 (lpdA)
   00020 Citrate cycle (TCA cycle)
    NYR95_19170 (lpdA)
   00620 Pyruvate metabolism
    NYR95_19170 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    NYR95_19170 (lpdA)
   00640 Propanoate metabolism
    NYR95_19170 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    NYR95_19170 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    NYR95_19170 (lpdA)
   00310 Lysine degradation
    NYR95_19170 (lpdA)
   00380 Tryptophan metabolism
    NYR95_19170 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    NYR95_19170 (lpdA)
   00670 One carbon pool by folate
    NYR95_19170 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xdy04147]
    NYR95_19170 (lpdA)
Enzymes [BR:xdy01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     NYR95_19170 (lpdA)
Exosome [BR:xdy04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   NYR95_19170 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Biotin_lipoyl Pyr_redox_3 GIDA FAD_oxidored DAO HI0933_like NAD_binding_8 AlaDh_PNT_C FAD_binding_2 Thi4 FAD_binding_3 3HCDH_N MCRA 2-Hacid_dh_C DUF478 Amino_oxidase GCV_H
Other DBs
NCBI-ProteinID: WOB53411
LinkDB
Position
complement(4423661..4425466)
AA seq 601 aa
MAVIEIKVPDIGDYSDVPVIEVLVALGDSVAKDQGLVTLESDKATLEVPSSAAGVVKELK
VKIGDTLSEGAVVLLLETEGEAAAPAPAKAETKAAAPGSKPPVTPSHRAPAEPAAPKPAL
ASGKAADIDCKMVVLGAGPGGYTAAFRAADLGLDTVLIERYASLGGVCLNVGCIPSKALL
HAAAVIDEVAHAGDFGVDFGQPKITLDKLREYKEKVVGKLTGGLASMAKQRKVRTVTGVA
SFVSPNELEIVGDDGKTQLLRFEHCVIAAGSQAVKLPNFPWDDKRVMDSTDALELHDIPK
TLLVVGGGIIGLEMATVYSALGSKVTVVEFMDQLMPGADKDLVKPLADRLKKQGVEIHLK
TKATDVKADKSGITVSFEAAVEGEKPGLPATAFDRVLVAVGRSPNGKKIGAEKAGVTVTE
RGFIPVDRQMRTNVPHIFAIGDIVGNPMLAHKATHEGKLAAEVAAGEKKEWVARVIPSVA
YTNPEIAWVGVTENEAKAKGLKVGVAKFPWAASGRAIGIGRTEGFTKLIFDEDTHRIIGG
AIVGVHAGDLLAEIGLAIEMGAEAEDIGHTIHAHPTLSESVGMAAEVYDGTITDLYIPKK
K
NT seq 1806 nt   +upstreamnt  +downstreamnt
atggcggtcattgaaatcaaggttcccgacatcggcgattacagcgatgtccccgtcatc
gaagtgctggtcgccttgggcgacagcgtggccaaggaccagggcctggtcacgctggaa
tcggacaaggccacgctggaagtgccgtcctcggctgccggtgtggtcaaagagctcaag
gtcaagattggcgacaccttgtccgaaggcgccgtagtgctgctgctggaaaccgaaggc
gaggccgccgcgcctgcgcccgccaaggccgagaccaaggccgccgcacccggcagcaaa
ccgccggtgacgccgtcgcaccgcgccccggccgagccggcagcgcccaagccggcgctg
gccagcggcaaggccgcggatatcgactgcaagatggtggtgctcggtgccggcccgggc
ggctataccgccgcgttccgcgccgccgacctgggcctggacacggtgctgatcgagcgc
tacgccagcctcggcggcgtctgcctcaacgtcggctgcatcccgtccaaggcgctgctg
catgccgccgcggtgatcgacgaggtcgcacatgccggcgacttcggcgtggacttcggg
cagccgaagatcaccctggacaagctacgcgagtacaaggaaaaagtggtcggcaagctc
accggcggcctggccagcatggccaagcagcgcaaggtgcgcaccgtcaccggtgtggcc
agcttcgtctcccccaacgagttggagatcgtcggcgacgacggcaagacgcagctgctg
cgcttcgagcactgcgtcatcgccgccgggtcgcaggcggtgaagctgcccaacttcccg
tgggacgacaagcgcgtgatggactccaccgacgcgctggaactgcacgacattcccaag
accctgctggtggtcggcggcggcatcatcggcctggaaatggccacggtgtacagcgcg
ttgggcagcaaggtcactgtggtcgagttcatggatcagctgatgccgggcgccgacaag
gacctggtcaagccgctggccgaccgcctgaagaagcagggcgtggagatccatctcaag
accaaggccaccgacgtgaaggccgacaagagcggcatcaccgtgtccttcgaagcggcc
gtggagggcgagaagcccggtctgccggccaccgcgttcgatcgcgtgctggtggccgtg
ggccgctcgcccaacggcaagaagatcggcgcggagaaggcgggcgtcaccgtcaccgag
cgcggcttcatcccggtggaccggcagatgcgcaccaacgtgccgcacatcttcgccatc
ggcgacatcgtcggtaacccgatgctggcgcacaaggccacccacgaaggcaaactggcc
gctgaagtggcggccggcgagaagaaggaatgggtggcgcgggtgattccgtcggtggca
tacaccaacccggaaatcgcctgggtcggcgtcaccgagaacgaagccaaggccaagggc
ctgaaggttggcgtggccaagttcccgtgggccgccagcggccgcgcgatcggcattggc
cgcaccgaaggcttcaccaagctgatcttcgatgaagacacccaccgcatcatcggtggc
gccatcgtcggcgtgcatgccggcgacctgctggccgagatcggcctggccatcgagatg
ggcgccgaagccgaagacatcggccacaccatccacgcgcatccgaccctgagcgagtcg
gtcggcatggcggccgaggtgtacgacggcaccatcaccgacctgtacatcccgaagaaa
aagtaa

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