Xanthomonas dyei: NYR95_20170
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Entry
NYR95_20170 CDS
T09460
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xdy
Xanthomonas dyei
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xdy03032
]
NYR95_20170
03400 DNA repair and recombination proteins [BR:
xdy03400
]
NYR95_20170
Enzymes [BR:
xdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NYR95_20170
DNA replication proteins [BR:
xdy03032
]
Prokaryotic type
DNA Topoisomerases
NYR95_20170
DNA repair and recombination proteins [BR:
xdy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NYR95_20170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WOB53583
LinkDB
All DBs
Position
4606894..4609407
Genome browser
AA seq
837 aa
AA seq
DB search
MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKN
EKHVEAIARAAKSADDIYLATDPDREGEAISWHIAEILKERGLLKDKTMQRVVFTEITPR
AIKEAMLKPRAIAVDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFIAREYWSIDAHCRHPSQPFNARLIKLDGQKFEQFTVTDGDTAEAARLRIQQ
AAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGVALGDE
GSVGLISYMRTDSVNLSQDALVEIRDVIARDFGTASLPDQPNAYTTKSKNAQEAHEAVRP
TSALRTPAQVARFLSDDERRLYELIWRRAVASQMIPATLNTVSVDLSAGSEHVFRASGTT
VVVSGFLAVYEEGKDTKSSEDEDEGRKLPLMKAGDNIPLDRIVTDQHFTQPPPRFTEAAL
VKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSKFLSGHFTRYVDYDF
TAKLEDDLDAVSRGEAEWIPLMEKFWGPFKELVEDKKDSLDKTDAGSVRVLGADPVSGKE
VSARIGRFGPMVQIGTVEDEEKPTFASLRPGQSIYSISIEDALELFKMPRALGQDKDQDV
SVGIGRFGPFARRGSVYASLKKEDDPYTIDLERAVFLIEEKEEIARNRVIKEFDGSDIQV
LNGRFGPYISDGKLNGKIPKDREPASLTFEEVQQLLADTGKPVRKGFGAKKATLKKNAVK
DSAKEAKDAAAKDAAAKKSAVKKAATKTAAKKAPAKKTAAKKAAKRVVKKTVSKAAG
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcacctgctcatcgtcgaatcgcccgccaaggccaagacgatcaataaatac
ctcggcaaggacttcaccgtcctggcctcgtatgggcacgtgcgcgacctcgtccccaag
gagggcgcggtcgacccggataacggctttgcgatgcggtacgacctcatcgaaaaaaac
gagaagcatgtcgaagccatcgcccgtgccgccaagagcgccgacgacatctatctggcg
accgacccggaccgcgagggtgaggcgatcagctggcacatcgccgagatcctgaaagag
cgcggcctgttgaaggacaagacgatgcagcgcgtggtgttcaccgagatcacgccccgc
gcgatcaaggaagccatgctcaagccgcgtgcgatcgccgtcgatctggtggacgcgcag
caggcccgccgcgcactggactatctggtcggcttcaacctgtcgccggtgctgtggcgc
aaggtgcagcgcgggctgtcggccggccgcgtgcagtcgccggcgctgcgcatgatcgtc
gagcgcgaagaagagatcgaagccttcatcgcacgcgagtactggtccatcgatgcgcat
tgccggcatccgtcgcagccgttcaacgcgcgtctgatcaagctggacgggcagaagttc
gagcaattcaccgtgaccgacggcgacaccgccgaagcggcgcgcctgcgcatccagcag
gccgcgcaaggcgtgctgcatgtcaccgacgtggccagcaaggagcgcaagcgccgcccc
gccccgccgttcaccacctccacgctgcagcaggaagcctcgcgcaagctcggcttcacc
acccgcaagaccatgcaggtggcgcagaagctgtacgaaggtgtggcactcggcgacgag
ggctcggtcggtctgatcagctatatgcgtaccgactcggtgaacctgtcgcaggacgcg
ctggtggagatccgcgacgtgatcgcgcgcgattttggcaccgcgtcgttgccggatcag
cccaacgcctacaccaccaaatccaagaacgcgcaggaagcccacgaagcggtacgcccg
acttccgcgttgcgtacgcctgcgcaggtggcgcgctttttgtccgacgacgagcgtcgc
ctgtacgaattgatctggcgccgcgctgtggcctcgcagatgattccggccacgctcaat
accgtcagcgtcgatctgtcggccggcagcgagcacgtgttccgtgccagcggcaccacc
gtggtggtgtcgggctttttggcggtctatgaggaaggcaaagacaccaagagcagcgag
gacgaggacgaaggccgcaagctgccgctgatgaaggccggcgacaacatcccgctggat
cgcatcgtcaccgatcagcatttcacccagccgccgccgcgcttcaccgaagcggcgctg
gtcaaggcgctggaggaatacggcatcggccgtccctccacctatgcttcgatcatccag
accttgcagttccgcaaatacgtggaaatggaaggccgcagcttccgccccaccgacgtg
ggccgtgcggtgtccaagttcctgtccgggcatttcacccgctacgtggactacgacttc
accgccaagctcgaagacgacctggatgcggtctcgcgcggcgaggcggaatggatcccg
ttgatggagaagttctggggcccgttcaaggaactggtcgaggacaagaaggattcgctg
gacaagaccgacgccggcagcgtacgcgtgctcggcgccgacccggtcagcggaaaggaa
gtcagcgcgcgcatcggccgtttcggcccgatggtgcagatcggcaccgtggaagacgaa
gaaaaacccacctttgcttcgctgcgtccgggtcagagcatctattcgatctcgatcgag
gacgcgctggagctgttcaagatgccgcgcgcgctgggccaggacaaggaccaggacgtc
agcgtcggcatcggccggttcgggccgtttgcgcgccgtggcagcgtgtatgcgtcgctg
aagaaagaggacgacccgtacaccatcgatctggagcgcgcggtgttcctgatcgaagag
aaggaagagatcgcgcgcaatcgggtgatcaaggaattcgacggcagcgacatccaggtg
ctcaacggccgcttcggcccgtacatcagcgacggcaaactcaacggcaagattcccaag
gatcgcgagccggcatcgctgactttcgaagaagtgcagcagttgctggccgacaccggc
aagccggtgcgcaaaggcttcggcgccaagaaggccacgctcaagaagaatgcggtgaag
gattcggcaaaagaggccaaggacgccgccgcgaaggacgccgcagccaagaagagcgcg
gtgaagaaagcggccaccaaaaccgctgcgaagaaggcgccggccaagaagactgcggcc
aagaaagcggccaagcgcgtcgtcaagaaaaccgtgagcaaggcagcaggctga
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