Xanthomonas dyei: NYR95_20280
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Entry
NYR95_20280 CDS
T09460
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xdy
Xanthomonas dyei
Pathway
xdy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NYR95_20280 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xdy03019
]
NYR95_20280 (rhlB)
Enzymes [BR:
xdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NYR95_20280 (rhlB)
Messenger RNA biogenesis [BR:
xdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NYR95_20280 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WOB53604
LinkDB
All DBs
Position
complement(4631666..4633393)
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AA seq
575 aa
AA seq
DB search
MSDKPLTDLTFSSFDLQPALVAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVTVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERNGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIDQKIPVEPVTTELLTPLPRTLRVAVEGEEVDDDAGDSVGTIFRE
AREQRAAEEQRRGGGRSGPGGASRSSSGSGGGRRDGGSADGKPRPRRKPRVEGEAPVAAV
AAAASVAPVVADAAAVAPSIDVEGERAPRKRRRRRNGRPVEGAEPVASTPVPAPAAPRKP
TQVVAKPVRAAAKPGGSPSLLSRIGRRLRSLVSGN
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatttgactttttcctcgttcgacctgcagccggcgttg
gttgccgggctggagggcgccgggtttacccgctgtaccccgatccaggcgctgaccctg
ccggtggcgttgccgggcggcgatgtcgccggccaggcccagaccggtaccggcaagacg
ctggcgtttttggtgacggtgatgaaccgcctgctgatccgcccggcgctggccgaccgc
aagccggaagacccgcgcgcgctgatcctggcgcccacccgcgagctggcgatccagatc
cacaaggacgcggtcaagttcggcgccgacctgggcctgcgctttgcgctggtctacggc
ggggtggactacgacaagcagcgcgagctgctgcagcagggcgtggacgtgatcatcgcc
accccgggccggctgatcgactacgtcaagcagcacaaggtggtttcgctgcatgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgacctgggtttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggtacccggcagacgctgctgttctcggcc
acgctgagccaccgcgtgctggagctggcctacgagcacatgaacgagccggaaaagctc
gtggtcgaaaccgagaccatcaccgccgcacgcgtgcgccagcgcatctatttcccgtcc
gacgaagagaagcagacgctgctgttgggcctgctgtcgcgcagcgaaggcgcgcggacc
atggtgttcgtcaataccaaggcgttcgtcgagcgcgtggcgcgcaccctggagcgcaac
ggttaccgggtcggtgtgctgtccggcgacgtgccgcagaaaaagcgcgaatcgctgctc
aaccgcttccagaagggccagctcgaaatcctggtcgccaccgacgtggccgcgcgcggc
ctgcatatcgacggggtcaagtacgtctacaactacgacctgccgttcgacgccgaagat
tacgtgcaccgcatcggccgtaccgcgcgcttgggcgaagagggcgatgcgatcagcttc
gcctgcgagcgctacgcgatgagcctgccggacatcgaggcctacatcgatcagaagatc
ccggtcgagccggtgaccaccgagctgctgacgccgttgccgcgcacactgcgcgtggcg
gtggaaggcgaagaggtcgacgacgacgctggcgacagcgtgggcaccatcttccgcgaa
gcgcgcgagcagcgtgcggccgaagaacagcgccgcggtggcggtcgcagcggtccgggc
ggcgcatcgcgcagtagcagtggcagtggcggcggtcgtcgcgacggtggcagtgccgac
ggcaagccgcgtccgcgtcgcaagccgcgcgtcgagggcgaggctccggttgctgccgtt
gcagcggctgcatcggttgccccggtggttgccgacgccgctgccgttgcgccgtccatc
gacgtcgagggcgagcgcgcaccgcgcaagcgtcgtcgccgtcgcaacggccgtccggtc
gagggcgccgagccggtcgcatccacgccggtgcctgcacccgctgcgccgcgcaagccg
acccaggtggtcgccaagccagtgcgtgccgccgccaagccgggcggcagcccgtcgctg
ctgagcagaatcggccgccgtctgcgttcgttggtctcgggcaactga
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