Xanthomonas dyei: NYR95_20830
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Entry
NYR95_20830 CDS
T09460
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xdy
Xanthomonas dyei
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xdy03016
]
NYR95_20830
Enzymes [BR:
xdy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NYR95_20830
Transfer RNA biogenesis [BR:
xdy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NYR95_20830
Prokaryotic type
tRNA splicing ligases
NYR95_20830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
WOB53698
LinkDB
All DBs
Position
4756760..4757983
Genome browser
AA seq
407 aa
AA seq
DB search
MSTSQHFEWLHAEGSTTPIKGWVRGVPLEEQAHAQLRTIAAVPFVGPWVAVMPDVHLGKG
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRASDLPDNLAQLRSSIERSVPVGNGRG
GEHRNLPDSIDTRIAQSGLVQRLEAIKQQHKRIRTDKLACQIGTLGGGNHFIELCLDETD
AVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAV
SWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQRETHHGEELLITRKGA
VSARTGELGIIPGSMGTRSFIVRGLGNAESFHSCSHGAGRVMSRTAARAQITLAQHREAT
AHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLRQVVCIKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttcacaacacttcgaatggctgcatgccgaaggcagcaccaccccgatcaag
ggctgggtgcgcggcgtgccgctggaagaacaggcgcatgcgcagttgcgcactatcgcc
gccgtcccgttcgtcgggccgtgggtggcggtgatgcccgacgtgcacctgggcaagggc
gcaaccgtgggctcggtgatcccgacccgcggcgccatcatcccggcggcggttggcgtg
gatatcggctgcggcatggcggcggtgcgcaccaccctgcgtgccagcgacctaccggac
aacctggcgcaactgcgctccagcatcgagcgtagcgtgccggtcggcaacggccgtggc
ggcgagcatcgcaacctgcccgacagcatcgacacgcgaatcgcgcagtcggggctggtg
cagcgcctggaggcgatcaagcagcagcacaagcgcatccgcaccgacaagctggcgtgc
cagatcggtacgctgggcggcggcaaccacttcatcgaactgtgtctggacgagaccgac
gcggtgtgggtgatgttgcacagcggctcgcgtggcaccggcaacctgattggcacctac
ttcatcgagcgggcgcgtgagcaactggcacaccgcgtgctgggctttcatctgcccgac
aaggacctggccttcttcatgcagggcgagccgttgttcgatgagtacgtggaagcggtg
tcgtgggcacaggattacgcgcgcgaaaatcgtgaagcgatgatggcgcgggtgttggcg
gagatgcgtcaccgcctgccgaagttccagctggagaagctggcggtcaactgccaccac
aactatgtgcagagggagacgcaccatggcgaggaattgctgatcacccgtaagggcgcg
gtgagcgcacgtaccggcgagctgggcatcattcccggcagcatgggcacgcgcagcttc
atcgtgcgcgggttgggcaacgcagagagcttccatagctgcagccacggcgcgggacgg
gtgatgagccgcaccgcagcgcgtgcgcagatcaccctggcccagcaccgcgaggccacc
gcacatgtggaatgccgcaaggatgcggcggtgatcgacgaatcgccggcggcatacaag
tccatcgacgcggtgatggcggcgcagcaggatcttgtcgaagtgctgcacacgctgcgc
caggtggtgtgcatcaagggataa
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