Xenia sp. Carnegie-2017 (soft corals): 124433331
Help
Entry
124433331 CDS
T08024
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03030
DNA replication
xen03410
Base excision repair
xen03420
Nucleotide excision repair
xen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124433331
03410 Base excision repair
124433331
03420 Nucleotide excision repair
124433331
03430 Mismatch repair
124433331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xen03032
]
124433331
03400 DNA repair and recombination proteins [BR:
xen03400
]
124433331
DNA replication proteins [BR:
xen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124433331
DNA repair and recombination proteins [BR:
xen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124433331
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
AAA_30
AAA_14
RuvB_N
AAA_16
PTCB-BRCT
AAA_5
AAA_33
RNA_helicase
BRCT_2
AAA_18
AAA_17
Motif
Other DBs
NCBI-GeneID:
124433331
NCBI-ProteinID:
XP_046839048
LinkDB
All DBs
Position
Unknown
AA seq
1085 aa
AA seq
DB search
MASMEMASLAQKNYRKVVLSEKYLRQKTGGSVKKAKKRKKSNVISSDEEDVLPPRLQKEV
KNKHEKEKQRKPQTIKGSSKKMVVTASDYFGSKPVEKALKMAKKRKEHVNDDSELKTMTR
CSRSDDITLSEKEIECENIAEKPSKKFILSHISTGGKSNYETTDKALKVKSNIQDFKCKE
SSTKASKKTQKSKQNAKTLEESKKMSKIKTEASDSKMLVKQITSVTENSQTNNNTAAKSI
KDDMKSAKPANTTPTKSKSLYTGKNISPQKKTEPSHSTPQSKSSKSKKSMNPVTPETPKA
AQKVSLEGSDGGQYKDSTPSSLERKQSGYRNFMSREGPRALGSKEIPRGSETCLLGKVFV
ITGVLESIERDDAVELVKRHGGKVTQAVSKKTNYIIVGRDPGMSKLEKSKQLGTKQISED
ELFEMIRSSNAAEETKCKKDEIVQNHSSSQFSDDTDSQRSVTDKSTGLSSQAGNSQSSII
SSACSAPATQTPVSSPIAGDRSGESLLWVDKYKPRTLRNIIGQQGERSNVNKLLRWLRNW
HKNQISGKPKGEIFXYFNRLFCRKEDGSIFKAALLSGPPGVGKTTSAHLVCQEAGFSFVE
FNASDSRSKKTLEQHVSELLDNTTVDSYFSVSGKKSLNTNHALVMDEVDGMAGNEDRGGM
QELINLIKSTKIPIICMCNDRNSQKVRSLANYCFDLRFQKPRVEQIKAAMMSIACKEGVK
ISVSAMENIVIGANQDIRQVLYNLSMWTARQKSLSYDETKTEAGRAQKDVKIGPFDVTRK
IFSAEESSKMKIQDQFSLFFNNYSLIPLFSQENYLQASPYKAKGDMKEILKCVSDAAESY
CHSDLVEKCIRGNNSWNLLPLQAFFSCVLPGSVMRGRIGHRIEFPSWLGKNSTTSKNSRI
LQELVSHAQLSIFCSKNELNLDYIPHLRNALSRPLINANSDNAPSKVAEVIQIMDDYNFL
KEDWENIMEVGLFDGMQKPQNAIESKVKAAFTRIYNKGSHLTPYSSNVGAKKKSKKNTNA
NLETDEIGVGEEMDVSSDESDQDIAETFKVKKNAKSVVKKGQSKTNTASTSKSRAKGTGK
GKNKK
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcatggagatggcaagtctcgctcaaaaaaactatcgaaaagtggtactaagc
gaaaaatatctgaggcaaaaaacaggaggatctgtgaaaaaggccaagaaacgaaagaag
tctaatgtcatcagttcagatgaagaagatgtattacccccaagactccaaaaggaagta
aagaataaacatgagaaggaaaaacaaagaaaaccccagacaatcaagggatcttcaaaa
aaaatggttgtaactgcatctgactattttggctcaaaacctgtggagaaagccctgaaa
atggcaaagaagcgaaaagagcatgtaaatgacgattctgaattgaagaccatgacaaga
tgtagtagaagtgatgatattacattgagtgaaaaagagattgaatgtgaaaatatagcg
gaaaagccatccaaaaagtttattttgtcccatatttctactggtggaaaaagcaattat
gagacaacagataaagctttaaaggtcaaaagtaacatccaagattttaaatgcaaagaa
tcgtcaacaaaggcctctaagaaaacacaaaaatctaaacaaaatgcaaagactttagaa
gaatcaaaaaagatgtctaagattaaaaccgaagcttcagatagtaaaatgttagtaaaa
caaataacatctgttactgaaaattctcaaaccaacaataacacggctgccaagtcaatc
aaagatgatatgaagtcagctaaacctgcgaatacaactcctacaaagtcgaagtctttg
tatacaggaaagaacatctcacctcaaaagaaaactgagccatctcactcaacacctcaa
tcgaaaagctcaaagtctaagaaaagtatgaatcctgtaactcccgaaacacccaaagct
gcccaaaaggtttcattggaaggatccgatggaggacaatataaggattcgaccccttct
tcgttagagagaaagcaatctggatatcgtaatttcatgtcacgcgagggaccacgtgcc
ctgggatctaaggaaattcccaggggtagtgaaacctgtttgttaggaaaagtatttgtt
ataactggagttcttgagagcattgaaagagatgatgcagttgagttagtcaaacgtcat
ggtggcaaagttactcaagctgtaagcaagaagacaaactacatcattgtaggaagagat
cccggaatgtcaaaattagaaaagtccaaacaattaggaacaaaacaaatcagtgaagat
gaattgtttgagatgattcgatcttcaaatgcagctgaagaaacaaaatgcaagaaagac
gagattgttcaaaaccacagttcttctcaattcagcgatgacacagacagtcagagatct
gttactgataaatcaactggtttgtcgagtcaagcagggaatagtcagtcgtccattatt
tcttctgcttgctcagcaccagcaactcagacacctgtttcatcaccaatagctggagat
agatcaggcgagagtctgctgtgggtagataagtacaaacccaggacacttaggaacatt
atcggtcagcaaggagagcgaagtaatgtgaacaagttgctccgttggttgaggaattgg
cataaaaatcaaatatctggaaagcctaaaggagaaattttttaatactttaataggtta
ttttgtcggaaagaagatggctcaatatttaaagctgctttactctctggtcctcctggt
gttggcaagacaacaagtgcccatttagtttgtcaagaagctggattctcatttgtggag
tttaatgctagtgattcaagaagtaaaaagactctagaacaacacgtatctgaacttctc
gataacactactgtcgattcgtatttcagtgtctcaggaaaaaaatccttaaatacaaat
catgccctcgttatggacgaagttgacggtatggctggcaacgaggatcgtggtgggatg
caagagctcattaatcttattaagtcaacaaagatccccatcatctgcatgtgtaatgat
cgaaacagtcagaaagtcagaagccttgcaaattattgcttcgatttgcgctttcagaaa
cccagagttgaacagatcaaggctgcgatgatgagcattgcttgtaaagaaggtgtgaaa
atttctgtttcagccatggaaaatatcgttattggagcaaatcaagatattagacaggtc
ttatacaatctttccatgtggacagctaggcaaaagtctctgtcctacgatgagacgaaa
accgaggctggtagagctcaaaaagatgtgaaaattggtccatttgatgtaacaagaaag
atctttagtgcagaggaaagttctaaaatgaaaatccaagatcaattttctctgttcttt
aacaattattcattaataccgctcttctcacaagaaaactatttacaagcttctccatat
aaggcaaagggtgatatgaaagaaatactaaagtgtgtaagtgatgctgcagagtcatat
tgtcattctgatcttgttgaaaaatgtattcgtggcaataatagctggaacttgttgccc
ttacaggcttttttctcctgcgtcctgccaggatctgtaatgcgtggaagaataggtcac
cggatcgagtttccttcctggcttggaaagaattcaacaacttctaaaaactcaagaatt
ttacaggaactagttagccacgcgcaattgagcattttctgcagcaaaaatgaactaaat
ttggactatatccctcatttaagaaacgcccttagcagaccattaatcaatgctaacagc
gataatgcaccttctaaagttgccgaagtcattcagattatggacgattataattttttg
aaagaagattgggaaaatatcatggaagtcggactgtttgatggaatgcaaaagcctcaa
aatgcgattgaatcaaaggtaaaagcggcgtttaccaggatttataacaaaggatctcat
cttacgccttattcatcaaatgttggtgcgaagaagaaatcgaaaaaaaacactaacgct
aacttagaaactgatgagattggcgttggtgaagaaatggatgtaagtagtgatgaaagt
gatcaagatattgccgagactttcaaagttaaaaagaatgcaaaatctgtggtaaagaag
gggcaaagtaagacgaacactgcatcaaccagtaaatcacgtgctaagggaactgggaaa
ggtaaaaataagaaatag
DBGET
integrated database retrieval system
