KEGG   Xenia sp. Carnegie-2017 (soft corals): 124434563
Entry
124434563         CDS       T08024                                 
Name
(RefSeq) pre-mRNA-processing factor 19-like
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
xen  Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03040  Spliceosome
xen04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:xen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124434563
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124434563
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xen03041]
    124434563
   04121 Ubiquitin system [BR:xen04121]
    124434563
   03400 DNA repair and recombination proteins [BR:xen03400]
    124434563
Enzymes [BR:xen01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     124434563
Spliceosome [BR:xen03041]
 Complex B
  Other components
   Prp19 complex
    124434563
 Complex C
   Prp19-CDC5 complex
    124434563
Ubiquitin system [BR:xen04121]
 Ubiquitin ligases (E3)
  U-box type E3
   124434563
DNA repair and recombination proteins [BR:xen03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    124434563
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_HPS5 U-box WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_WDR75_2nd Nucleoporin_N Beta-prop_WDR35_TULP_N RMC1_N Beta-prop_DCAF12 PCP_red ATG16 PUMA_CC
Other DBs
NCBI-GeneID: 124434563
NCBI-ProteinID: XP_046840402
LinkDB
Position
Unknown
AA seq 507 aa
MALNCAISNEVPEHPCVSPVSSCVFERRLIEKYIAENGVDPITNEVLTEEQLIDIKASPL
VKPKPPSATSIPAILKSLQDEWDATMLHSFSLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGIVAMAPTPVAPAVPNVNNDEPMEVKVGEESGMTDDVLQKLQ
DKATTLTAERKKRGKKIPESLATVDELRSYKQISSHLGLHSASNPGILALDLHAADTSRV
LTGGLDKNAVVFHRETEQVVATLKGHSKKVTSVVYHPTEDIVFTASPDTTIRVWSVSNSS
CTEIVKAHDAPVTGISLHATGDYLLSCSLDQHWAFSDIRTGRVLTKCISDVSSSQSLTCA
QFHPDGLIFGTGTTDSVIKIWDLKERANVANFPGHSGPVTSISFSENGYYLATSADDSVV
KLWDLRKLKNFKTIALEDRYEVKSLGFDQSGVYLAVAGSDVQIYMVKQWELLKTFTDHSG
VATGVKFGKNASFIASTGMDRNLKFYA
NT seq 1524 nt   +upstreamnt  +downstreamnt
atggcgttgaattgtgcaattagcaatgaggttcccgagcatccttgtgtttctccagtc
tcaagttgtgtgtttgagaggaggctaatagaaaaatacattgctgagaatggtgttgat
cctattactaatgaggttttaacagaagagcagcttattgacattaaagcaagtccactg
gtgaagcctaaacctccatctgccacaagcattcctgccattttgaagtcattgcaagat
gaatgggatgcaacaatgcttcacagttttagccttaggcagcagcttcaaacagcaaga
caagaactttcccatgcattgtaccagcatgatgctgcatgtcgggtcattgcccgtctt
accaaggaagttacagctgccagagaagctctggccaccctgaaacctcaagctggcatt
gttgccatggcgccaacacctgttgctccagcagtaccaaatgtcaataatgacgagcca
atggaagtcaaggttggtgaagaaagtggaatgacagatgacgttctgcagaagttgcaa
gataaagctacaactcttacggctgaaaggaaaaagagaggaaagaaaataccagaaagt
ctggcaacagttgatgaacttcgctcttataaacaaatatcatcacaccttggtctacac
agtgctagtaaccctggaatcttagctttggatctccatgctgctgatacttctcgtgtt
cttacaggtggtttggataagaatgcagtggttttccatcgagaaactgaacaggttgta
gcaacccttaaaggtcattccaagaaagttacgagtgtggtttatcatccaacagaggac
attgtgttcactgcatcacctgacacaacaatacgcgtttggtctgtttcaaactcaagt
tgtacagaaattgtcaaggcacacgatgctcctgtgacaggcattagtttacatgctact
ggtgactatctcctaagttgctccttagatcagcattgggctttctctgacatacgaacc
ggtcgcgttttaacaaaatgtatttctgacgtatcatcaagtcagtctttgacctgtgca
caatttcatcctgatggtttaatctttggaactgggacaactgacagtgtaataaaaata
tgggatttaaaagaacgagcaaacgttgccaatttccctggacattctggtccagtaact
agtatttcattttctgaaaacggatattatttggcaacatccgccgatgattctgttgtc
aagctttgggatttaaggaaactaaaaaatttcaaaactattgctttggaagatcgttat
gaggtgaaatctttgggatttgaccaaagtggtgtatatttagctgttgctggttcagat
gtgcaaatatacatggttaagcaatgggagctgttaaaaacatttactgatcattcgggt
gttgcaactggtgtgaaatttggtaaaaatgctagtttcattgcatccactggaatggat
cgaaatctaaagttctacgcttga

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