Xenia sp. Carnegie-2017 (soft corals): 124434634
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Entry
124434634 CDS
T08024
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03030
DNA replication
xen03420
Nucleotide excision repair
xen03430
Mismatch repair
xen03440
Homologous recombination
xen03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124434634
03420 Nucleotide excision repair
124434634
03430 Mismatch repair
124434634
03440 Homologous recombination
124434634
03460 Fanconi anemia pathway
124434634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xen03000
]
124434634
03032 DNA replication proteins [BR:
xen03032
]
124434634
03400 DNA repair and recombination proteins [BR:
xen03400
]
124434634
Transcription factors [BR:
xen03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124434634
DNA replication proteins [BR:
xen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124434634
DNA repair and recombination proteins [BR:
xen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124434634
MMR (mismatch excision repair)
124434634
DSBR (double strand breaks repair)
HR (homologous recombination)
124434634
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
IBR
Motif
Other DBs
NCBI-GeneID:
124434634
NCBI-ProteinID:
XP_046840478
LinkDB
All DBs
Position
Unknown
AA seq
601 aa
AA seq
DB search
MPVPLTEGAIKEIMMNPNNLPKNPILQILGLKKVGQGQSNPNDRYRMVLSDGIHAHTCAM
LATQLNHMVNENEIEAKAVIRLDKYICNVIQSTRKVLILLGVSVIQKASASERYGEPTPY
DESKINTANKPTVQKSPVKKDHYTSTSLGSSHYANNQRSAGGPPNQNNNIGNVYPISSLN
PYNSRWTICARVTSKSTIREWSNSRGNGRLFNVELIDESGEIRATCFTDLVDKFYPKLEQ
NKVYYISKGSVKPANKKYSSIKNDYELTFNHDTSIELCTESKDLPVLQFNFLNIANIEKI
EPDQLVDVIGVCSDITDVVEITTRAGKQVAKRNLQIMDKTASITCTLWGHEAQSLEQYVG
SNPIIAIKGAKVSDFSGKSISVLSSSAIHIDPDNVQESFELRQWYDTESHENINSITGQR
GEGKITNVYKHVGEIAESLQGMSDKPEYFSVIGAVTYIKKENCLYKACPRKDCNKKIIED
GERYICEKCNETYSSYKYRLLLKFLFVDGSGKYWATCFQNSAESLLGMTAEQVGELMETN
EKRFDRLFERGFRRGHFCVRAKIDKFNEEARLQCTFDKVLPINYKKETRRLMQELDQMID
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgccagttcctttaacggaaggtgcgattaaggagattatgatgaatcctaacaatctt
cccaagaatcctattcttcagattctaggacttaagaaagttggtcaggggcaatcaaac
ccaaatgatcgatacagaatggttttgtctgatggaatacatgcccatacttgtgccatg
ttggcaacacaacttaatcatatggttaatgagaacgagatagaagcaaaagctgtaatt
cgtttggataaatatatttgcaatgttatccaaagcacaaggaaagtattgatattactt
ggtgtaagtgtgattcaaaaagcatcagcatctgaacggtatggtgagccaactccatat
gatgaatcgaaaataaatacagcaaataagcctactgttcaaaaaagtcctgttaaaaaa
gatcattatacttcaacaagtcttggtagctctcattatgcgaacaatcaaagaagtgct
ggtggcccaccgaatcagaataataatattggaaatgtttatccaatcagctcattaaac
ccatataatagcaggtggacaatttgtgcacgtgtcacttcaaagtccaccataagagaa
tggtctaattcacgtggtaatggtcgtcttttcaatgttgaacttatcgatgaatctgga
gaaattcgagcaacatgttttactgatcttgtggataaattctatcctaaacttgaacaa
aacaaggtatattacatttcaaaaggaagtgtgaagcctgcaaacaaaaagtattcgtct
atcaagaatgactatgaactcactttcaatcatgatacatctattgaactgtgtactgaa
tctaaagatcttccagtcctacaatttaactttctgaatattgctaatattgaaaaaatt
gaacctgatcagttagttgatgttattggtgtttgctcagatattacagatgttgttgag
attacaactagagcaggaaaacaggttgccaaacgtaatttacagatcatggataaaact
gcttccattacgtgcactctctggggtcatgaggcccagtctcttgagcaatatgttggt
tcaaatcccataattgcaatcaagggagccaaagtttcagattttagtggaaagtcaatc
agtgtcctcagctcaagtgccattcatatagatccagataatgtacaagaatcttttgaa
cttcgtcaatggtatgatacggagagccacgaaaacatcaattcaataacaggccagcga
ggtgaaggaaaaattacaaatgtttataaacatgtcggtgaaattgcagaatctcttcaa
ggaatgtctgacaagccggagtattttagtgttattggtgcagttacatatatcaagaaa
gaaaattgtctttacaaggcttgtcctagaaaagactgtaacaaaaaaatcattgaagat
ggtgaacgatatatttgcgagaaatgtaacgagacttattcaagctataaataccgtctc
ttattaaaattcctttttgtagatggttctggtaagtattgggcgacttgttttcagaat
tctgctgaatcacttctcggaatgacggcggagcaagttggcgagctgatggaaacgaac
gagaaacgatttgaccgtttattcgaacgtggcttcagacgaggtcatttttgtgtacga
gcgaagattgacaaatttaacgaggaagcgcgcttgcaatgtacttttgataaagttctg
ccgatcaactacaaaaaggaaacaagacgtttgatgcaggagttagaccaaatgattgat
agttga
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