Xenia sp. Carnegie-2017 (soft corals): 124435084
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Entry
124435084 CDS
T08024
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124435084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124435084
03012 Translation factors [BR:
xen03012
]
124435084
Enzymes [BR:
xen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124435084
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124435084
Translation factors [BR:
xen03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124435084
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
nSTAND3
NPHP3_N
ATPase
AAA_19
AAA_22
NACHT
ResIII
AAA_7
AAA_23
Motif
Other DBs
NCBI-GeneID:
124435084
NCBI-ProteinID:
XP_046840987
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MYKRDSGGQKNDWRGGYEERRRGGRGRGSGRGRGGGRGHGGGRGGHPPGLTGAQIGMWYK
EKSEQSNIRKEREQRQEVSMSKSHEQHLRKMIDSLDECESSSSSTDQQDWFQAINFQENR
FPRIMLKNDEVMNEILKKDLIDKKKLGDQMMEFRKKLPAFAVKDKIVDLVAMNQVVLISG
ETGCGKTTQVPQFILDDAIEKGVGSSCRVVCTQPRRISAISIAERVAQERGETVGNGSTG
YQIRLESKPPRDQGSIMFCTIGVLLRWLMSDPNLLRMSHVIIDEIHERSILSDFLLIVVR
DILPRRPALRVVLMSATLNADIFSEYFGGCPILNIPGFTFPVKQYFLEEIVKTLRYQCPP
TKKRKLWGRRNKKDDLNREEMWKKYLIDLHHSENDSFTAESLANMDFEKIDHSLVEQLLM
HIGRNMKEGAVLVFLPGWQDISALNDILKKNPFFSSDKFLVLPLHSLMPTVNQRQIFDRP
ACGVRKIILSTSLAETSITIDDVVFVVDCGKTKESNFDVDKQLSTLLPVWISKASSKQRK
GRAGRVQEGVCFHLFTKFHYEEMNDYQLPEILRTPLEEICLQVKCLKLGMVESFLKKALQ
SPSDKSIALAIESLKQLNAFDSSENLTPLGVHLARLPVHPKIGKIILLGAIMSCLDPVLT
IASSMGFRDPYVVPLEMVEKADKTRKMFSPGTQSDHLTLYEAFRKWEVAERCSNGKQFCW
DNFLSFSVLKSIKNMKTQLAEHLFDAGFIESTDSKQFTANCNSENQSLIKGILCAGFYPN
VIHVTHFPNSRRPPKLTVQQDGRMVRVEIHPKSVNHDEYNFLSNWLIYLEKVKSTKIFVQ
DCSTVSPYSLLFFGGDISTSVDEDEEIVTVDYWIKFNCRLSVAILVKRLREEFHRLLEDK
IRNPCLTLNFGEKSKTSKRQNVVLKTIIDLITSD
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgtacaaaagggattctggtggccagaagaatgattggcgtggaggatatgaagaaaga
agaagaggtggaaggggtcgtggtagtggacgaggtcgtggtggtggacgaggtcatggt
ggtggtagaggtggtcacccacccgggttaactggtgcacagataggaatgtggtataaa
gaaaaatctgaacagtcaaacatcagaaaggagagggaacagcgtcaagaggtgtcaatg
tctaaatcacatgaacaacatttgagaaagatgattgatagtttggatgagtgtgaatct
tcatcgtcatctacagatcaacaagactggtttcaggcgataaatttccaggaaaatcga
ttcccgcgcattatgttgaaaaatgacgaagtaatgaatgagatcttaaagaaagatttg
attgataagaagaaactaggggaccagatgatggagttcagaaaaaagcttccagcattt
gctgtgaaagataaaattgttgacttggttgccatgaaccaagttgttttaatcagtggg
gaaactggatgtggtaaaactacacaggtaccgcagtttatattggatgatgctattgag
aagggagtgggatctagttgtcgtgttgtatgtacccaaccaaggagaataagcgcgatt
tcaattgctgaaagagttgcacaagagcgtggtgaaactgttggaaatggaagcactgga
tatcaaattcgacttgaaagtaaaccaccacgtgaccaaggatcgatcatgttttgtact
ataggagtgttattaaggtggctcatgtctgatcctaaccttttacgaatgagtcatgta
attattgatgaaatccacgagcggagtatactgtcagattttctacttattgtcgttcga
gacattttacctagaagacccgctctacgagttgttcttatgagtgccaccttaaacgca
gatatattttcagaatattttggaggttgtcctatacttaacataccaggatttacgttt
cctgtgaagcaatactttcttgaggaaattgtcaagacacttagataccaatgtcctccg
acgaagaagagaaaattatggggaaggagaaataagaaagatgatttaaacagagaagaa
atgtggaaaaaatatttaattgacttacatcacagtgagaacgattctttcacggcagaa
tctttagcaaatatggattttgaaaagatcgatcattctttagtggagcaacttcttatg
catattggtcgaaatatgaaagagggtgccgttcttgtgtttctgcctggttggcaagac
atatctgcattgaatgacattttgaagaaaaatccatttttctcttctgacaagtttcta
gttctgccgctgcattcgttgatgccaactgtaaaccagcgtcagatcttcgacagacct
gcttgtggtgtgagaaagatcattttgtcaacaagtttggccgagacaagtatcacgatt
gatgatgttgtctttgtggttgactgtggtaaaacaaaagaatcgaattttgacgtcgac
aaacaactttctacactcctaccagtttggataagtaaagcttcgtccaaacaacggaaa
ggtcgcgctggaagggttcaagaaggtgtgtgctttcatttgttcacaaaatttcattat
gaagaaatgaatgattatcagcttcctgaaatattgcgaacacccttggaagagatttgc
ttacaagtgaagtgcctgaaactgggtatggtggaatcttttttaaaaaaagccttacaa
tcaccatcagacaaatcaatcgcactcgccattgaatcgctgaaacagctaaatgcgttt
gattcaagtgaaaacctcacacctttaggtgtgcatttagctcgcctacctgtacatcca
aaaattgggaaaattattttactcggtgcaataatgtcctgtttggatccagtcctcacg
atcgcatcaagtatgggatttcgtgatccgtatgttgtacccttggaaatggtggagaaa
gcagataaaaccagaaaaatgttttctcctggaacacaaagcgatcacctcactttatat
gaagcctttcgtaaatgggaggttgcggaaagatgtagcaacggaaagcagttttgttgg
gataacttcctctcgttttcggtcttgaagtccatcaaaaatatgaaaactcagctcgca
gaacatctttttgatgccggtttcattgaatcaacggattcaaagcaatttaccgctaac
tgtaactcagaaaaccaatcgttaataaagggaattttgtgtgctggtttttatcccaac
gtcattcatgttacacactttcccaattcaagaaggcctccaaaacttactgttcaacaa
gacgggcgtatggtaagagtagaaatccatcctaagtcagtgaatcatgatgaatacaac
ttcctaagcaactggttgatatacttggaaaaagtaaaatcgactaagatatttgtgcaa
gattgcagtacagtttcaccatactctcttctattttttggcggtgatatttcgacgtct
gttgatgaagatgaagaaattgtaactgttgattattggatcaagtttaattgcagattg
agtgttgccatcttggttaagagattacgtgaagagttccatagacttttagaagacaaa
attcgtaacccttgcttgacgttgaactttggcgagaaatccaaaacttcaaaaagacaa
aatgtagttctaaaaaccataattgacttgattactagcgattga
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