Xenia sp. Carnegie-2017 (soft corals): 124435342
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Entry
124435342 CDS
T08024
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03018
RNA degradation
xen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124435342
09123 Folding, sorting and degradation
03018 RNA degradation
124435342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124435342
03041 Spliceosome [BR:
xen03041
]
124435342
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124435342
mRNA degradation factors
5'-3' decay
Lsm complex
124435342
Spliceosome [BR:
xen03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
124435342
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
Motif
Other DBs
NCBI-GeneID:
124435342
NCBI-ProteinID:
XP_046841235
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MASSLESYVGHTVAVVTQDGRMIVGLLKGFDQTINLILDESHERVFSSTSGVEQVILGLY
IIRGDNIAVIGEIDDDTDSSLNMANIRADPLNPVVY
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctctttggaatcgtacgttggtcatactgttgctgttgttactcaagatggc
cgaatgatcgtgggacttttaaaaggtttcgatcaaactatcaacttgatcttggacgaa
agccacgagagggttttctcgtcaacaagcggtgtggaacaagttatcttgggtctttac
atcatcagaggggataacatagcagttattggtgaaatagacgacgatactgattcaagt
ttgaacatggcgaatatcagagcagatccattaaatcccgttgtttattga
DBGET
integrated database retrieval system
