Xenia sp. Carnegie-2017 (soft corals): 124436403
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Entry
124436403 CDS
T08024
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124436403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124436403
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124436403
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124436403
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
124436403
NCBI-ProteinID:
XP_046842272
LinkDB
All DBs
Position
Unknown
AA seq
2392 aa
AA seq
DB search
MAIRFVDATYLALTRISFLVTDLSKKNYKSSMAEIQNLVDQYGTEAERHRFRSLFSSIDF
SVEGKGSGKDFQQVQMLSQECQSLICKTNFVSIICFALENQEQFQKSLKPSIHLLPQISK
VLKFSRVQEVVFGLALMKSSNEELRNFAGLFVKQKLPDLLRSYIDSDVGGGLEGGLTDVA
IEVLHVLLTYLLYTPQKEVGIGEDQKQAFLTTLRKDFPSERVPVVLAPLLYQGVHDMSLN
RFSLESSPVPKLMMEDDMSKLMHEVGYLCCSSMQECKEIVGQFYKSNVTPMCIAKVLGMM
ARTVSGLGESLSLQTSVNVITPMELKNPEEPSTGPSTWNVEVFVQTVKDLLPEMNWKQVI
SCLDHSGFFISTVEALRLIVTACQKGLHEVFPIEVLYRPWSNTRGQLSWIQQSLINPDVF
CFADYPCHTVVIDILKSPPEDNNKEILTWQSLSLVETLLRLAECGHYDAVKSLFDFPIKH
CPDVLLLALLQINPQWQILKFDLASVLIPMFLANHPNSLCVLHHVWHGQGQSSPAIRHLV
VQAMADCYMKGDQMDLSRILDVAQDLKALSILLNGSTFAFVIDLAALASRREYLKLDKWL
NDKLREHHEDFAVAVVDFLKRRCPHLAGIIPEKELPKSAQLPQETVNTMLSCLQVYSGHV
TLELNEEIKQMISRHGPILKSRQPSLSVPLSSLSRQTSRDPALPTQMDSFAGLNFSSGPI
PPTPTTPSQLPNFPPHPLSSGGGLGTIGLGSAIGQAPSKSLSQLSAGLSSSGGNPLLQQL
PVGFSNDNFQSLGVSSSTSSFTSTKPMGSFSSQPTQTTGQTQQQRLQAEKLRQTSAGNDI
TAVLPGVNQSFSSEVESEANSYFQKIYNQPPNPTMTIDEVLEMLKKFKDSSSKKEKEVFL
CMLRNLFEEYGHFHNYPNRELHTTACLFGGIIDQGLVTFMALGIALRYVLDALRKPYQSK
MYLFGITALDRFRMRLKDYQHYCRHLASIPHFNEFPSHLIQFIEYGIQSMQPPLSGRSLQ
ETTMTNYFGRVSSSTVSDTLTTSSAAAVTTSALTSSTSEASKQFSLSTGMSSSGNARKEP
SIANASNIDTLLGASEKSELAQPSESIQDKVHFIFNNISSSNLAQKGDELKDAVKTEYFP
WLAQYLVMKRVSIEPNFHDLYVKFMETLKWKELYQLVLQETYRNIKVLLQSDKVPANFSD
RSLLKNLGHWLGLMTLAQNKPVLMRNLDVKSLIIEAFFKGQQEMLYVVPFVAKIMEGCAK
SRIFKPPNPWVMAVMGVLVELHQVPDLKLNLKFEVEVLCHTLGIDMKEEITPTTLLKDPE
KLNRITHQLSSPDKDRLTGPSFPTQAPPSTPPPPQYSYQEINVSSLAGLAAHIKINPQIA
LFQQQPQLRQYVRPAIDRAVQELIHPVVERSIKICLTTAEMIVKKDFALDPDESRMRAAA
YGMVRFMTAGMALITCREPLNVSINNNLRTALTAAMRGATSQQKEAIDSAAQVISEENTE
LACTFIQKTAVEKALPEMDKRLTSEFELRRHARSEGRRYCDPVVLTYQAERMPEQIRLKV
GGVTPNQTAVFEEFAKTIPGFITPSPEDNLTAQTSFANTRSIFEQSIHSSEPTIISDDIA
QILGKCSAEIEHYLHTMNLTQSSPHGLAIIGLLDVLVSARTSRDGASLLRVVHKAVKGLL
EGLNPIPSDTEFALRYRDCHLVVLRGLQDPRACGPHWTGKYVTKFVCECPPDVKFNVDVI
DILIRSRLINMREFDVYLAQCIENDLNVSAIHFAVQLTKLYLIDEHSNHVSQGDLSKTLD
ALSRMAASRNGVGDTLPSILELIRSGGMGAGGDFSQRLNDLEKGSGSQSGLSLGLSGRLF
EDPPGLHDKVEFLLREWVRLYHQPAAGKESEKAFSTFVAMLHQHGILKTDDLITRFFRIS
TELCVENTYRALIEHASNPSHARAKCFSTLDAYCRLIALLVRHSGDASNSVTKINLLTRV
LGTVVQVLLQDHELRKTDFHQLAYHRIFIILLLELNQPETVLETINYQVLQTFSTIFHAL
RPSRAPGFAYAWLELISHRMFMSKLLLNTPQQKGWVLFQQLLIDLFKFLAPFLRNAELNK
PMHLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPNCIQMRNLILSAFPRNMRLPDPF
TPNLKVDLLTDIAHSPRILTNFASAIQPPTFKKELDSYLKTRAPVTFLTELRSHLQVATE
PGTRYNVPLMNALVLYVGTQAIAYIHSKSGTPSMSTITHSSHMDIFQNLAVDLDTEGRYL
FLNAVANQLRYPNSHTHYFSCVLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLIT
FIELIKNHQYKFWSHDFVHCAPEIEKLFESVARSCMQQKQPQNREGGTNDGT
NT seq
7179 nt
NT seq
+upstream
nt +downstream
nt
atggcgataagatttgtggatgcaacttatttagctttgacacgaataagctttctggtg
acggacctctctaaaaagaactacaaatcaagtatggctgaaatacaaaatttagtggat
cagtatggtactgaagcagaacgccacagatttcgttcattgttttcttcaattgacttc
tctgttgaaggcaaaggtagtggaaaagactttcaacaggttcaaatgcttagtcaagaa
tgtcagtcgttgatttgcaaaacaaattttgtgtcaattatttgttttgcactagagaat
caagaacagtttcaaaagtccttaaagccttccattcatcttctccctcaaataagcaag
gtcctgaaattcagtcgtgtgcaggaggttgtgtttggtttagctttgatgaaatcatcc
aacgaagagcttaggaactttgctggactatttgtcaagcaaaagctaccagatcttcta
cgttcctacattgattcagatgttggaggtggtctagaaggaggtcttacggatgttgca
attgaggtccttcatgtccttcttacgtacttgctatacacacctcagaaagaggttggt
attggtgaagatcagaagcaagcttttcttactactctgagaaaagatttcccaagcgag
cgggtacccgttgttttggctcctttactttatcaaggagttcatgatatgtcattaaat
cgatttagtcttgaaagctcacccgtgcctaagttgatgatggaagatgacatgagcaaa
ttaatgcacgaagtcggttacttgtgttgttcaagcatgcaggagtgtaaagagatcgtt
ggtcaattttacaagtcaaatgttactccaatgtgtattgccaaggttctaggaatgatg
gcaaggaccgtttcaggtcttggagaatctctctcgttacaaacatcggtgaacgttatc
acgccaatggagttaaaaaaccccgaagaaccatcaacaggtcctagcacatggaacgtg
gaagtatttgttcaaactgtcaaagatttgcttccagagatgaattggaaacaagtgatt
tcttgtttggatcattctggattcttcatcagcactgtggaagctctgcgcctgatagtc
acagcctgtcaaaaaggattacatgaagtatttccgattgaggttctttatcgaccctgg
tctaacactcgtggacagttgtcttggatccagcaatcattaataaatccggatgtcttc
tgttttgctgactatccttgtcatacagttgttattgatattcttaaatcgcctcccgag
gataacaataaagagatcttgacatggcaatcattgagtcttgtagagacattacttcga
ctagctgaatgtggtcattacgatgcagtgaaatccttgtttgattttcccatcaagcat
tgtcctgatgttttactcttagccttacttcagataaacccccaatggcaaatattaaag
ttcgatctagcctctgtacttattccaatgtttcttgcaaatcatcccaactctttatgt
gttctacatcatgtatggcatggtcagggtcaatcttctcctgccattcgacatcttgtt
gttcaagcaatggctgactgctacatgaaaggcgatcaaatggatctgtcgcgaatactt
gacgttgcccaagatttaaaggctctttctatcttactgaacggttcaacctttgcgttt
gttattgatctggctgcgttggcgtcacgtcgggaatatcttaaactggacaaatggttg
aatgacaaacttcgtgaacatcatgaagattttgctgttgctgttgttgatttcttaaaa
agacgctgtccacatttggcaggcattattcccgagaaagagttgcctaagagtgcacag
ttaccccaagaaactgtaaacacaatgttatcgtgtctgcaggtttattcaggacacgtg
accttggagttaaatgaagagataaaacaaatgatatctcgtcatggtccaattctgaaa
tccaggcagccatctttaagtgttcctctatcatcgttgtcaaggcagacaagccgtgat
cccgcacttccaacacagatggactcttttgctggcctaaatttttcatcgggtcccatt
cctccgacacctacaaccccatcacagctaccaaatttcccgccgcatcctctatcgagt
ggtggtggattgggcactatcggtcttggttccgccattggtcaagcgccttcgaaatca
ttgtctcaattaagtgcaggattatcgagtagtgggggtaatcctcttcttcaacaattg
cctgttggattttcgaacgacaactttcaatctctcggtgttagcagttcgacgtcaagc
tttacttccaccaaacctatgggttcgttttcctcacaacctacacagacaactggacag
acgcagcaacaacgtttgcaggctgagaaacttcgtcaaacttccgccggcaacgatata
acggcagttttgcctggcgtaaatcaatcgttctccagtgaagttgagagcgaagcaaac
tcgtactttcagaaaatttataatcaaccacctaacccaactatgaccattgacgaagtc
ttggaaatgctaaagaaatttaaagattcctcgtcgaaaaaggaaaaggaggtgtttctt
tgtatgctacgtaatctgttcgaagaatatggtcactttcataattatcctaacagagaa
ctgcatacgaccgcttgcctctttggtggtatcattgatcaaggccttgttacgtttatg
gctttgggaattgcgttacgatatgtacttgacgccctacgaaaaccataccaaagtaaa
atgtatttgtttggtataacagctctcgacaggtttcgaatgagattaaaagattatcaa
cattattgtcgacacttggcgtccatacctcatttcaacgagtttccttctcacctcatc
cagtttattgaatatggaattcaatcaatgcagcctccactgagcggtcgctctttacag
gaaacaacaatgacgaactattttggcagagtaagttcatcgactgtctccgatactctc
acaacctccagtgcagctgctgttactacttcagcactaacgtccagtacatcagaagcg
tcgaaacaattttctctgtcgactggaatgtcctccagcggaaatgccaggaaagaacca
tcaattgcaaacgctagtaatatcgatactcttcttggagcgtcagaaaaatccgaactt
gctcaaccgtctgaatctattcaagataaagttcacttcatctttaataatatttcaagc
agcaatttagcacaaaagggagacgaactgaaagacgccgtaaaaactgagtattttccc
tggcttgctcagtatcttgtcatgaaacgcgtcagtattgaaccaaacttccacgatctt
tatgtcaaatttatggaaacattgaaatggaaggaattatatcagcttgttttacaagaa
acttatcgaaatatcaaggttttactgcaatcagacaaagttcctgcaaatttctccgat
agatctttattgaaaaacctcggtcattggttggggcttatgacgctggctcaaaacaaa
cctgtcttgatgaggaacctggacgtgaaatcgcttattatcgaagcatttttcaaaggg
caacaggaaatgttgtacgttgttccctttgttgcaaaaatcatggaaggatgtgctaag
agtaggatattcaaacctcctaatccttgggtaatggcagttatgggtgttcttgttgaa
ttgcatcaagttccagacctgaagctcaatcttaaatttgaagtcgaagttttatgccac
acattgggtattgacatgaaggaagaaataactccaactactttactaaaggatcccgag
aaattgaaccgcataactcatcagttatcgtcacctgacaaagatcgactgacaggtcca
tcttttccaacccaggccccaccaagtactcctcctcctccccagtactcttatcaagag
atcaacgtctcgtcattggcgggacttgctgctcatattaaaatcaatccccagattgct
ctgttccaacaacaacctcaattgcgacaatacgttcgtccagccatagatagagctgtc
caggaattgatccatccagtcgtagaaagatccatcaaaatttgtttgacaaccgctgaa
atgatcgtaaaaaaggattttgcacttgacccggacgagtctcgcatgagggcggctgcc
tacggtatggtccgatttatgactgccggaatggcgttgatcacgtgtcgtgagccattg
aatgtcagtattaataacaacttaaggacagctttaacggctgccatgaggggtgcaaca
tctcagcagaaagaagcgattgacagcgcagctcaagttatcagtgaagaaaacacggag
ctagcatgtactttcattcaaaagacagcagtggaaaaagcccttcccgagatggataaa
cgactcacatccgagttcgagttgagacgtcatgctcgtagtgaaggtcgacgttattgt
gatcccgttgtgttgacttatcaagcggagagaatgccagaacaaattcgattaaaggtt
ggtggtgtgacgcccaatcaaacggctgtatttgaagagtttgctaagaccatcccaggt
tttattacacccagtccagaagacaatctaaccgctcaaacgtcgtttgccaacactagg
tctatctttgaacaaagtatacattcaagtgagccaacgattatatccgatgacattgcc
cagatacttggcaaatgctctgcagaaatcgagcactacttacacaccatgaatttgact
caaagcagtccacatggtttagctatcattggcttacttgacgtccttgttagtgctaga
acttcaagagatggtgcctcgcttctccgtgttgttcacaaggctgtgaaaggcttgctc
gaaggactcaatccaataccgagcgacacggagttcgctttaagatacagagattgtcat
ctggtcgttttgcgaggtcttcaggatcctcgtgcttgtggtcctcactggacgggaaaa
tacgtgaccaagttcgtgtgtgagtgtcctcctgatgtgaaattcaacgtcgatgttatt
gatatcttgattagaagtcgtcttataaacatgagagagtttgatgtctatctggcacag
tgcatcgagaacgatcttaacgtgtctgctattcattttgccgttcagttgacgaagctt
tatcttatcgacgaacatagtaatcatgtttctcagggtgatctctccaagacattagat
gctctctctaggatggctgcctccaggaatggtgttggcgatacattgccttctatactt
gaacttattcgcagtggtggaatgggcgctggtggtgacttctcacagagattaaacgat
cttgaaaagggatcaggcagccaatctggattatctctgggattatccggacgattattc
gaggatccgcctggtcttcatgataaggtggaatttttgttgcgtgaatgggttcgactt
tatcatcaacctgctgctgggaaagaaagtgaaaaagcattttcgacatttgttgccatg
cttcatcaacatggaatattgaagactgatgatctcatcacgaggttctttcgcatcagt
acggagttatgtgtcgagaacacgtacagagcactcattgaacacgcgtccaatccaagt
cacgctcgagcaaaatgtttcagtactttggatgcttactgtcgtttaattgcattgctc
gtgaggcattctggggatgcaagcaatagtgtaacgaagataaatctactgaccagggtt
ttgggtaccgtagtacaggtcttactccaagatcacgaattgcgtaagactgatttccat
cagcttgcttatcatagaatttttatcatactactgttggagttaaatcaaccagagact
gtgttggaaaccatcaactatcaagtgttgcaaactttcagtaccatattccatgctctt
cgcccttcacgggctcctgggtttgcgtatgcttggctggaactcatttcacatcgtatg
ttcatgtcgaaactgctgttaaacacaccgcaacagaagggatgggtattgttccagcag
ttgttgattgatctcttcaaattccttgcgccattcttgagaaatgccgagttaaataaa
ccaatgcatcttctttataagggaacactgcgtgttttacttgttttacttcacgatttc
cccgagtttctctgcgactatcacttcagtttctgtgatgtcatacctcccaattgcatt
caaatgagaaacttaatccttagtgctttcccgagaaatatgagattgccagatccattt
actccaaaccttaaagttgatttgctcacagacattgcacattctcccagaattttgaca
aattttgccagtgctattcaaccgccaacatttaagaaggaattagattcatatctgaaa
acaagagctcctgttactttccttacagaactaaggtctcacttacaggttgccacagaa
cctggtaccagatacaatgtgccattgatgaatgcacttgttctttatgttggtactcag
gccattgcatatattcacagtaaaagtggtacaccaagcatgtctaccatcacacattca
tcacatatggatatttttcaaaatcttgctgttgacttggacaccgaaggacgttacctt
ttcttaaatgctgtggccaatcaacttcgatatcccaacagtcacacacattactttagt
tgtgttctgttgtatctgtttgctgaagctaataccgaagccattcaagaacaaatcacg
agagtgcttttagaaagacttattgtcaataggcctcatccttggggcttactgattacg
tttattgagttgataaaaaatcatcaatacaaattttggagtcacgactttgttcattgt
gcacctgagattgaaaaattgtttgaatcagttgccagaagctgtatgcagcagaagcaa
ccacagaacagggaaggtggtacgaacgatggtacctga
DBGET
integrated database retrieval system
