Xenia sp. Carnegie-2017 (soft corals): 124437627
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Entry
124437627 CDS
T08024
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124437627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xen03021
]
124437627
03041 Spliceosome [BR:
xen03041
]
124437627
03036 Chromosome and associated proteins [BR:
xen03036
]
124437627
Transcription machinery [BR:
xen03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
124437627
Spliceosome [BR:
xen03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124437627
Complex B
124437627
Complex C
U2 SnRNP specific factors
124437627
Chromosome and associated proteins [BR:
xen03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
124437627
TFTC complex
124437627
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
WDR55
Motif
Other DBs
NCBI-GeneID:
124437627
NCBI-ProteinID:
XP_046843553
LinkDB
All DBs
Position
Unknown
AA seq
1224 aa
AA seq
DB search
MHLYSLTLQRASAITRAIHGNFSGTKSQEIVVTRGGSIELLRPDPNTGKVIPVLAVEVFC
VVRDIAPFRLTGGSKDYIVVGSDSGRIVVLEYIPYKNVFERVHMETFGKSGCRRIVPGQY
LAVDPKGRAIMIGAVEKQKLVYIMNRDAAARLTISSPLEAHKSHTLVFDITGIDVGFENP
MFACLELDYEEADQDPSGEAAQTTQQTVTFYELDLGLNHVVRKYSEPLEERGNLLISVPG
GSDGPSGVLVCSENYLTYKNFGDQQDLRMPIPRRKNDVDDPERGMIFVCAATHKTKSMFF
FLLQTDQGDIFKCTLETDEEMVMVTEIRLKYFDTTPVASSMCVLKTGFLFVASEFGNHYF
YQIAHLGDDDDEPEFSSNMELEEGTTFFFQPRTLKNLVLVDELDSLAPIMSCQIADLANE
DTPQLYAACGRGSRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVKLNKSEDYDSYIIVSF
VNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALLQVYPDGIRHIRSDKRVNEWKS
PGKKTIVKCAVNARQVVIALSGGELVYFEMDQSGQLNEYTERKQMSADVSCMALGSVPVG
EQRCRFLAVGLNDDTVRIISLDPQDCLQPLSMQALPDSAESLCIVEMGGKEGNEETREGG
GLSGLFLNIGLENGVLLRTVLDTVTGDLSDTRTRYLGSRPVKLFRVKMHGSDAVLAMSSR
SWLSYSYQSRFHLTPLSYESLEYASSFSSEQCPEGIVAISANTLRILALEKLGAVFNQIS
HPLKYTPRKFVIDSESNSLIIIETDHNSFTDKGKADRKQLMAEEMVESVADEDKAAVAQV
AAEFLQEDLPEQQFGATKAGPGMWASVIRVFDPIKGETLDLVELKQNEAAFSVCVCRFAS
KGPDETYILVGTATDMTLKPRSCSGGAIHTYKLVTMMNYGGQKLELVHTTEMDDIPSAIA
SFQGRVAVGVGRFLRIYDLGKKKLLRKCENKKLPNLIVGLHSVGQRIVVMDVQESFLFVR
YKAHENQLVIFADDINIRWMTCQCLLDFNTMAGADKFGNIFVVRLPTSTSDEIDEDPTGN
KAFWDRGLLHGAPQKADTICNFFIGETVLSLQKATLIPGGSESLVYTTISGRVGMLVPFT
SREDIDFFQHLEMHLRSENAPLCGRDHLSYRSYFLPVKNVIDGDLCEQFNSLDSSKRRNI
AEELDRTPAEVSKKLEDIRTRYAF
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgtattctctgactcttcaacgagcttctgcaatcacacgtgctatacatgga
aatttttctggcacaaaatcgcaggagattgttgtgacacgtggagggtcgattgagctg
cttcgtcctgacccaaacactggtaaagtgatacctgtgttggctgtggaagtattttgt
gtggtcagagatatagccccatttcgtttgactggtggaagtaaagactatattgttgtt
ggatctgattctggcagaattgttgtcttagagtatattccgtacaaaaatgtatttgaa
agggttcatatggagacctttggaaaaagtggttgtagaagaattgtccctggtcaatat
cttgctgttgatcctaaggggcgagctattatgattggtgctgttgaaaaacaaaaactt
gtatacattatgaatcgcgatgctgctgccagacttactatatcatcaccacttgaagca
cataaatctcatactttggtgtttgacatcactggaattgatgttggctttgaaaatcca
atgtttgcttgtcttgaattggattatgaggaagcagaccaagatccgtctggtgaagca
gctcaaacaactcaacagactgtaacattttatgaacttgatctaggtttgaaccatgtc
gtgaggaaatacagtgaaccacttgaagagagaggaaatcttctcatttcagttcccgga
ggtagtgatggaccaagtggtgttctagtttgctctgagaattatttaacatataaaaac
tttggtgatcaacaagatttacgaatgcccatacctcgacgaaagaatgatgttgatgat
ccagagagaggaatgatctttgtatgtgctgctacacacaaaacaaagtccatgtttttc
tttctgttgcaaaccgaccaaggagatatatttaaatgtacccttgaaacagatgaggag
atggtgatggttactgaaatacgacttaaatattttgataccaccccagtggcatcgtca
atgtgtgtgttgaaaactggctttctgtttgttgcatctgaatttggaaatcattatttt
tatcaaattgctcatttgggtgatgatgatgatgaaccagagttttcaagcaacatggaa
cttgaagaaggaacaacattcttttttcaaccaagaactttgaaaaatcttgtccttgtt
gatgagttagacagcttggcacctattatgtcctgtcagattgcagatcttgccaatgag
gacacaccacagttgtacgcggcgtgtggtcgtggttcgcgatcttcactacgtgtattg
aggcatggtttggaggtatctgaaatggctgtgtcggagttacctggtaatcctaatgcc
gtttggactgtaaaattgaacaagtctgaggattatgattcttatatcattgtgtcattt
gtgaatgctaccttggttttgtccattggtgagacagttgaagaagttactgatagtggc
tttcttggtacaactcctactttatcttgttcgttgcttggtgaagacgctttacttcag
gtctatcctgatggtattagacatattcgttcggacaaacgtgtcaacgagtggaaatct
cctggcaagaaaaccatcgtgaaatgtgctgtgaacgcgagacaagttgtgatagcgttg
agtggaggagaacttgtctacttcgaaatggatcagtccggtcaattgaacgaatacact
gaacgtaagcaaatgtcagcagatgtgagttgtatggctcttggtagcgttcctgttggt
gaacagcgatgtcgatttcttgctgttggcttaaatgacgacactgtcagaattatttcc
ctagatccacaggattgtttacaaccattaagtatgcaggctttaccagactcagcggag
tcgttgtgtatagttgaaatgggtggaaaggaaggtaatgaagagactagagaaggtgga
ggtttatctggattatttcttaacatcggactagagaatggtgtattgttgcgaactgtt
ttggatacagtcacgggtgatttatctgacaccagaactcggtatcttggatctcgacct
gtcaaacttttccgcgttaaaatgcatggatccgatgcagttctggcgatgtcaagtcgt
tcttggcttagttactcctaccaatcacggtttcatctcacgcctttatcgtatgaaagt
cttgagtatgcttctagcttttcatctgaacaatgtccagaaggaatcgttgccatctcg
gccaatactttgaggattttagcgcttgagaaactcggtgcagtttttaatcagatttct
catccattgaaatacacaccgcgaaagtttgtcattgattctgagagtaacagtctgatc
attattgagactgatcacaactccttcacggataaaggaaaagcagaccgtaaacagttg
atggcagaggaaatggtggagtccgtagctgatgaagataaggcagcagttgctcaggtt
gctgcagaatttttacaggaagatttacctgaacagcagtttggagccactaaagccggt
ccaggaatgtgggcttccgtgatcagagtatttgatccaatcaagggggagacattggat
ctagttgaattaaagcaaaacgaagcagcatttagtgtgtgcgtctgtcgttttgcgtcg
aaaggcccagacgagacgtacatcttggtgggaactgcaactgatatgacactcaaaccc
aggagttgctccggtggcgcaatacatacatacaaactagttacaatgatgaattacggt
ggacagaaattggaattagtgcacacgacagaaatggatgatataccttcggcaatagca
tcctttcagggtcgtgtagctgttggtgttggacgatttttgagaatatacgacttaggg
aagaagaaacttcttcgaaaatgcgaaaacaagaaacttcctaatttgattgttggactt
cattctgttggtcaaagaattgtcgtgatggacgttcaagaatcttttctcttcgtgcga
tataaagcacatgagaatcaacttgttattttcgccgatgatatcaatatacgatggatg
acgtgtcaatgtcttcttgattttaacacgatggctggagcggataaatttggaaatatt
ttcgtggttcgtcttccaacgtcgacctcagatgaaatagacgaagatccaaccggcaac
aaggcattctgggatagaggcctattacatggagctcctcagaaggcagacactatatgt
aatttcttcatcggtgaaacagtgttatctcttcagaaagcaacgctcattcctggagga
tccgaatccttggtgtatacgacaatttctggtcgtgtcggaatgctcgttccattcact
tctcgcgaggatatagacttcttccaacacttggaaatgcatttacgttctgagaatgca
ccgctgtgtggtcgtgatcatcttagttatagatcttacttcttgcctgtcaagaatgtt
attgatggtgatctttgtgagcagtttaactccctcgattccagtaaaagacgtaatatt
gctgaagaattagatcgaacgcctgccgaggtatcaaaaaaactagaagacatcagaacg
agatacgctttctaa
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integrated database retrieval system
