Xenia sp. Carnegie-2017 (soft corals): 124438185
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Entry
124438185 CDS
T08024
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124438185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124438185
03041 Spliceosome [BR:
xen03041
]
124438185
03009 Ribosome biogenesis [BR:
xen03009
]
124438185
03016 Transfer RNA biogenesis [BR:
xen03016
]
124438185
Enzymes [BR:
xen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124438185
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124438185
Spliceosome [BR:
xen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124438185
Complex C
U4/U6.U5 tri-SnRNP related factors
124438185
Ribosome biogenesis [BR:
xen03009
]
Eukaryotic type
Pre-60S particles
Helicases
124438185
Transfer RNA biogenesis [BR:
xen03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124438185
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DBC1
Motif
Other DBs
NCBI-GeneID:
124438185
NCBI-ProteinID:
XP_046844163
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MADFEEDLFSVFNDVDRSKKDGKTVEVTDYDDKDSLKRIFSQRGEKRLHGECVDGNLLST
TQNDENLKKVKRQDDESSIIDSVPIVDIITVETFEACTHEVAVPQGIVYNELKVPTTKPA
KEYPFILDPFQKEALSCIENNHSVLVSAHTSAGKTVVAEYAIALSLRNKQRVIYTTPIKA
LSNQKYRELYEEFQDVGLMTGDVTINPSASALVMTTEILRSMLYRGSEVMREVAWVVFDE
IHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNASQFTAWIAHLHRQPCHAVYTEYRP
TPLQHYIYPAGGDGLFLVVDENGAFREDNFQKSMAVIQEGPGSSQQRGRKGGTKGPSNTF
KIVKMIMERKFQPVIVFSFSKKECEAYALQMSKLDFNTDEERKLVEEVFNNAIDCLSDDD
KKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFALGLNMPART
VVFTNPRKFDGKDFRWITSGEYIQMSGRAGRRGLDDRGIVILIIDEKMGSDIGKGLLKGS
ADPLNSAFRLTYNMVLNLLRVEEVNPEIMLERSFYQYQNYATIPEMIQKLKDLETKRDAI
VIHNEESIASFYKIRHQLKKLGDDMLGFIHRPKYCLPFMQPGRLVHVKHEDMDFDWGVVI
NFQKKAKHKSGNVSDETLYVLEVLVNCSLKPTKTASGNIPNPCPPGEKGEMQVIPVLLKL
IQAISSVRLYIPKDIRSLDARQNVGKSIQEVKKRFKDGLPLLDPIDDMGIKDEGLKSIVR
KIEALEHKLYTHPMQKDPDRESLYQLCEQKSKVIVTYKASQKEIKKCRTVLQMDELKCRK
RVLRRLGYSTSADVIELKGRVACEISSADELVLTEMIFNGVFNDLTVEQCTALLSCFIFQ
EKSSEMPKMSEQLSGPLRQLQETARRIAKVSQEAKLDVEIEDYVESFKPQIMDVVYSWSK
GASFSQICKMTDVFEGSVIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIV
FAASLYL
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttcgaagaagacctcttttcagtttttaatgatgttgatagaagcaagaaa
gatggaaaaaccgtagaagttacagattacgatgataaagattctttgaagcgtattttt
tcccagcgtggtgaaaaacgactgcatggcgagtgtgtggatggtaatttattatcaacg
acacaaaatgacgagaatttaaagaaagttaaaagacaggacgatgaaagttcgataatt
gattccgttcccattgttgacatcattacagtagaaacatttgaagcttgtacacatgaa
gttgctgttccacaaggcatagtttataatgaattaaaagtaccaaccacaaaacctgcc
aaggaatatccatttattctggacccatttcagaaagaagctttaagttgtatagaaaat
aatcattcagttttagtctctgcacatacttcggctggaaaaacagttgtggctgaatac
gcgatagctttatcattaagaaacaaacagagagtaatttatacaacaccaatcaaggcc
ttaagtaatcagaaatatcgcgaactttatgaggagtttcaagatgtcggactgatgact
ggtgacgtcactattaatcctagtgccagtgctcttgtcatgacgacagagattttacga
agcatgttgtaccgcggctcagaggttatgagagaagttgcgtgggttgtttttgatgag
attcactacatgagagataaagagcgtggtgtagtttgggaggagacgatcattttacta
cctgataatgtgcactacgtttttttatcggcaacaatacctaatgcaagtcaatttact
gcatggattgcccatcttcatagacagccttgtcatgctgtttatacggaataccgtcct
actcctttacaacattatatttaccctgctgggggtgatggtctgtttcttgttgttgat
gaaaatggtgctttcagggaagataatttccagaaatccatggccgtgattcaggaaggc
cctgggtctagtcaacagagaggaagaaaaggaggaactaaaggaccatcgaatacattt
aagatagtaaagatgattatggagagaaagtttcaacctgtcattgtatttagcttcagt
aagaaagaatgtgaagcatatgctttacaaatgtcgaaattagactttaatacagacgag
gaacggaaattagtcgaagaggtttttaataacgctattgactgtttgtctgatgacgat
aaaaaacttcctcaggttgaacatgttttacctttgttaaaacgaggcattggaattcat
cattctgggttgttaccaatattaaaagaaaccattgaaatattgttttctgaaggattg
ataaaggctttatttgctacagaaacatttgctcttggcttaaacatgccagcaaggact
gttgtctttactaatccacgaaaatttgatggcaaagactttagatggataacatccggg
gaatatatacaaatgtcaggtcgtgctggacgtcgtgggttggatgatcgtgggatcgtt
attcttataattgatgaaaaaatgggatcagatattggaaaagggttattgaaaggtagt
gcagatccattaaacagtgcatttcgccttacttacaacatggttttgaatttactgcgt
gttgaggaggtgaacccggagataatgttggaacgatcattttatcaatatcaaaactac
gctactattcctgaaatgatacaaaagttaaaggatttagagacaaagcgtgacgccatt
gttattcataatgaagaatccattgcatcattttataaaatccgacaccaactgaagaaa
cttggtgatgatatgttgggatttattcatcgaccaaaatattgtttgcctttcatgcaa
cctggacgtctggttcacgtaaaacatgaagatatggattttgattggggagttgtcata
aattttcagaaaaaggcaaagcacaagtcgggaaatgttagtgatgaaaccctttacgtg
ttggaagttttggttaactgttcattgaaaccaactaagacagcaagtggaaacattcct
aatccttgtccaccgggagagaaaggcgaaatgcaggttattcctgtcttattaaagtta
attcaagctataagtagtgtaagattatatattcctaaagatattcgatctcttgatgcg
agacagaatgttggaaaatctatacaggaagtaaaaaaacgctttaaagatggtctacct
ttattggatcctatcgatgacatgggaattaaagacgaaggtcttaaatcaatagttagg
aaaattgaagcactagaacataaactgtacactcatccgatgcaaaaagatccagatcgt
gaatctctttatcagttgtgcgagcagaaatccaaagtaattgttacatataaagcaagc
caaaaggagataaaaaaatgtcgaacagttttacaaatggacgaactaaagtgcagaaaa
agagttttacgaagattgggttattcaacatcagctgacgttattgagcttaaaggaaga
gtagcgtgtgaaattagcagtgctgatgaactcgttttgactgaaatgattttcaatggg
gtctttaatgatcttactgttgaacaatgtactgctttacttagctgttttatttttcaa
gaaaagagttcagagatgccaaaaatgagcgagcaattatcaggaccattacggcaactt
caggaaactgccagaagaattgcaaaagtttctcaagaagctaaacttgatgtcgaaatt
gaagattatgtcgagtcatttaaaccacaaataatggatgttgtttactcatggagtaaa
ggcgcttcattctcacaaatttgtaaaatgacagatgtttttgaaggaagtgtaattcgt
tgtatgagacgattggaagaacttctaagacagatgtgtcaagctgctaaagcaattgga
aacactgaattagaaaataaatttgctgaagggataacgaagatcaaaagggacattgta
tttgctgccagcttgtatctgtaa
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integrated database retrieval system
