Xenia sp. Carnegie-2017 (soft corals): 124438232
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Entry
124438232 CDS
T08024
Name
(RefSeq) LOW QUALITY PROTEIN: ribonuclease 3-like
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124438232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124438232
03009 Ribosome biogenesis [BR:
xen03009
]
124438232
03036 Chromosome and associated proteins [BR:
xen03036
]
124438232
Enzymes [BR:
xen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
124438232
Messenger RNA biogenesis [BR:
xen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
124438232
Ribosome biogenesis [BR:
xen03009
]
Eukaryotic type
90S particles
RNase
124438232
Prokaryotic type
rRNA processing factors
124438232
Chromosome and associated proteins [BR:
xen03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
124438232
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Helical_CED_Drosha
RM44_endonuclase
dsrm
DSRM_MRPL44
Motif
Other DBs
NCBI-GeneID:
124438232
NCBI-ProteinID:
XP_046844206
LinkDB
All DBs
Position
Unknown
AA seq
1732 aa
AA seq
DB search
MHSATKYISESKSKEDGNPIQIIGALKMHGTGLEGKTLLPSVVRPESALYTKPMTSLSSM
SACNDPNIDRPKTPYVNNITVHPLNRGHVPTIPFPQQINHSLNNHGVVPLATQHTVPIPQ
NTDNHVIPLNLQHIGAGEIRPHIGQVALANVNPGFATQQQMFANSEVQRFKPSVSVTNNI
MLTGNAHSGSNQVYTKQEHRTPLLHHNLDDPNIQTLIPHRTLTTDNILLTGNTQSNLSET
DAGSEGRISLLHHNIDNSNVHTVVHHHTSLTNNILLTGDTQSKMKYKAVFSDSKVQSHDD
SHYINLTDAHQSALQPLVNESTHSNEGGTGHQLASLQPLVNESTPSNEGGTGHQLASFNA
SSVEFQKFASPMKAAYSNKCKLDDADLFNDEDRSSQNDERRKRGSKKKGKTGVSSRERKS
HFDLDERRTFFGGILHENNKFASVGSYHPDFHSSRSESDFCVNENETIGESHVSPGYPRS
YLYSNSPRSGSLLPVVEDDHVVYKDSYRHLNSEVISRNEFECRSPRSEYHYQSSQFEEND
WLSFRESRDSQEIGNLNERETYFGGLFRSIDRSRSPRSYTRRHSPTPSSSGGHSPMRSRC
RTRSSKRSTSHVRLSRRSKSRTFSSRRSSRENERGRRFRLQNVISPARSEHRYERSAITK
RQSSSKTERPGKEGALFVEERHKVSRRASRERCLNDEKQSTEAKDSDKRRRTHMKPYSYK
RRRTGSKSPRGSPSLSSHRTSSTGDRLRRSYLSRDRYPEGDISHKPRKKDDDLSDASRRA
LKCFCLPQPHVKRTFVYEKSSNACIDEANRVHKEFEELLSKEKALANAEPPTISQTLVSD
DCTRSDHSDDDTRFVHDLLHCDDANDNDVSDSDIEFEGSDSDSSAPDDPVSKRQKFRGQD
SLMRLHSELWYNVKGEVNQGKKCLCSVQDQKKWIVHDIYPDEKLPEPCKSMEEDELKHLH
HYWITVYPHSNFMTENPTKIQCNGNTYIFEGFSLLSHSSLDAIPKCFFTRFNFEYEILFI
EEPVPNNFDVRDLHLFSRFLFHDVLELYDWTIGQVKDHDSNFCDLFYFLPRFTRRISEND
NGPQEYELLSMRSVWKYLLESHKPLISEETLSLEKGLWKEYVDSCVNSIVMKPGWKPSSI
RVDDIERTNKGEAMIVHKGIRPVQLSFSGHPKCRRLKNKYLKLRSVVQNNRGVSKNERLR
LIKLKLTLDNMKMKDSLRRSCCVRVSARDMMKTGLNSDVTQHAMVLPVLVHHVRFHLSLF
SLDKRLAYTFKDRSLLQLALTHPSYVMNYGTNADHARNSLSNCGVKEPRYADKTQRLSQR
RKKGIVQLINTMSKLEDLDGSHSFIHHNERLEFLGDAILEFICTSHLYFLFPDMAEGGLV
AHRSSLVQNKHLAHIAEKLQLDHYMLFSHGPDLCHKDDMNHAMANCLEALLGAVYLDSGI
GSVQKVFCELVFEETELRKLWCALPKHPLQEQEPGGDRHIIPSSEVLKGLVSLEESIGVR
FNHIRLLARAFTHAQVGXHLTLGDNQRMELLGDSIVQCLVTDYLYRHFPQHHEGHLTLLR
SSLVNRNIQAQIATEVGLDRYIHFGNGPVVPNLKKKNLSDLFEAFLAALFVDKGIEPVEV
FCKVCLFPRLRDVIINQEWLDAKSQLQSCCIAQSKHDKLPVYKVVNSVGSANMKHYTVAV
YFDGKRLATGSGNSIHEAEMNAAIKGLEVAHIPEKIRQKIVMKKSKEDTYRK
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atgcattcagctacgaaatatatttcggagtccaagtctaaggaagatggcaatccaatt
caaattattggtgctctaaagatgcacggaactggactggagggcaagactttgctgccc
tcagtcgttcgacctgaatctgccttgtacaccaaaccaatgacttctctttcgagcatg
agtgcttgcaatgatccaaatattgatagaccaaagactccttatgtaaataatataact
gtgcatcctctcaacagaggtcatgtgcctaccataccatttccacaacaaattaaccat
agtttaaacaatcatggtgttgtaccccttgctactcaacacactgttccaatacctcag
aatactgacaatcatgtcataccgctaaatctacaacatattggtgctggtgaaattcgt
cctcacattggtcaagttgctttggcaaatgtaaatccaggttttgccacccaacagcag
atgtttgctaattcggaagtgcaaagatttaaaccatctgtttcagtcaccaataacatt
atgctaactgggaatgctcattctggttcgaatcaagtttatactaaacaggaacataga
acaccattgctgcaccataatcttgatgatccaaatatccagactttgatacctcatcga
acattaacgacagataatatccttctcactggaaacacacaatcaaatttgagcgaaacc
gatgctggaagcgaaggacgaatttcacttctgcatcataacattgacaattcaaatgtc
catactgtggtgcatcatcatacatctttgaccaacaatatcctccttactggagatact
caatctaagatgaagtataaagctgtttttagcgactccaaagtacaaagtcatgatgat
tcacattatatcaatttaactgatgctcaccaaagtgctttacagccattggttaatgag
tccactcattctaatgaaggaggaactggacaccagcttgcttcattacagccattggtt
aatgaatccactccctctaatgaagggggaactggacaccagcttgcttctttcaatgct
tcttctgttgagtttcaaaaattcgcttcaccgatgaaggcagcatactcgaataaatgc
aaactcgatgatgcagatttatttaatgacgaagatcgatcttcacagaatgatgagcga
agaaaaagaggatcgaaaaagaaaggcaaaactggtgtttcatcccgtgaaaggaaaagc
catttcgaccttgacgaaagaagaacattttttggtggtatattgcatgaaaacaataag
tttgcaagcgtaggctcttaccatcctgattttcactcgagtcgtagcgaatctgacttt
tgtgttaatgaaaacgaaaccattggtgaaagtcacgtgagtcctggttacccacgtagt
tatttatattcgaatagcccacgatcgggcagtttgttgcccgtagtagaggatgatcac
gtggtctacaaagactcttatagacatttaaattcagaggttatttcgaggaacgagttt
gaatgtcggtcacctcgttcagagtaccattatcaatcctcacaattcgaggaaaatgat
tggctgagctttagagaatcacgtgacagccaggaaattggcaacttgaacgagagagag
acatattttggagggttgtttagatcgattgaccgaagccgctctcctcgtagttatacc
aggagacattctcctacaccttccagttccggtggacattctcccatgaggtcaagatgc
cgtactcgatcgtctaaacgatcgacttcccatgtgcgtttatcaagaaggtcaaaatcc
cggacgttttcctcaaggagatcaagtcgcgaaaatgagaggggaaggcgatttcggcta
caaaatgtcataagtccagcaagaagcgaacatcgatatgaaaggtctgcgataaccaaa
cgccaaagtagctctaaaactgaaaggcctggtaaagagggtgccttgtttgtcgaggaa
agacataaagtttctcggagagctagccgagaacgctgtctaaatgatgaaaaacagtcg
actgaggccaaggattcggataaaagacgacgaactcatatgaagccatattcctacaaa
cgtcgacggaccggaagtaagtctcctcgaggttctccgtctttatcttcccataggacg
tcgtcgaccggagacagattgagaagaagttatttgtcacgtgatcgatatcccgaaggc
gacatttcacataaacctcggaagaaggacgatgatttgagcgatgcatcaagacgtgca
ctcaagtgcttttgccttccgcaaccgcatgtgaaacgaacattcgtttatgaaaagtca
tcaaatgcatgtatcgacgaggcgaaccgggtgcacaaagaattcgaagagctattgagt
aaagaaaaagcgcttgccaatgctgaaccgccgaccatcagtcaaaccttagtttctgat
gattgcacgcgctccgaccacagcgatgacgacactcggtttgtccacgatctccttcac
tgtgatgacgcaaatgataatgacgtcagcgacagtgatatcgaatttgagggaagtgat
agcgacagcagcgcacccgatgatcctgtatcgaaaagacagaaattccgtgggcaagat
agccttatgagattgcattctgaattatggtacaacgtgaaaggagaggttaaccagggt
aagaaatgtttgtgcagtgtgcaagatcaaaagaaatggatcgttcacgatatttatccc
gatgaaaagttgccggagccatgtaaatcaatggaagaagacgaattaaaacatctacat
cactactggatcacagtctaccctcattccaatttcatgactgaaaatccaacaaaaatt
caatgtaatggaaacacgtatatctttgaaggtttctccctcctctcccactcctctctt
gatgcaattcccaaatgcttttttacgagattcaactttgaatatgaaatactctttatc
gaagaaccagttcccaacaatttcgatgttcgtgatcttcacctgttttcaagatttctt
tttcacgatgtcctggagttatacgactggactattggacaagtgaaagatcacgacagc
aatttttgtgatcttttctacttcttaccaagatttacgcgcagaataagtgagaatgat
aatggaccacaggaatacgaactcttgtcaatgagaagtgtctggaaatatcttttggaa
agtcataagccattaataagtgaggaaacattgagtctggagaaaggattgtggaaagaa
tacgttgattcttgtgtcaatagcattgtcatgaaacctggctggaaacccagctcgatc
agggtggatgacattgaaagaaccaacaagggtgaagccatgattgttcacaagggcata
agaccagttcagctcagtttctctggacatccaaaatgtcgaagactcaaaaataagtat
ttaaagttgagatctgtggttcaaaacaaccgtggagtatctaagaatgaacgattacgc
ctaatcaagttgaagttgactttggacaacatgaaaatgaaagattcacttcgacgaagt
tgttgtgttcgtgttagcgcacgtgacatgatgaaaaccggattaaactcggatgtcact
cagcatgcaatggttcttcctgttctggttcatcatgtccgctttcatttaagcttgttc
agtttggataaacgcttggcttacacatttaaagatagatctcttttacagctcgctctt
acgcatccatcatacgtcatgaactacggtacgaatgctgatcatgcccgaaacagccta
tcaaactgtggggttaaagaacccaggtatgctgataagacgcaacgtttgtcacagcgt
aggaagaaagggattgtacagctcatcaacactatgtcgaaactggaagatctcgacggt
agccattcattcattcatcacaacgagcgtctggaatttcttggagacgccatattggaa
ttcatctgcacttctcatttgtatttcttgtttcccgacatggctgaggggggactggta
gcccacagatcttcgttggtgcaaaataaacatttggctcacattgctgagaaactccag
ttggaccattacatgttattttctcacggaccggatctttgccataaagatgatatgaat
catgcgatggcgaattgtcttgaagctttgttaggcgctgtttatttagattcaggtata
ggaagcgtacaaaaggtgttttgtgaactcgtctttgaggaaacggaacttcgtaaatta
tggtgtgctctaccgaagcatccgcttcaggaacaagaaccaggaggagatcgtcatatc
attccatcttcagaagttctcaagggtcttgtcagtcttgaagagtcaattggagtacgt
tttaatcacattcgtcttctggcgagggcatttactcacgctcaagttggcnttcattta
acgcttggtgacaatcaacgaatggagttgctaggcgactctatcgtccaatgcctggta
acggattatctctatcgtcattttcctcagcatcacgagggacatcttacgttgctaaga
agttcgctcgttaaccgcaacatacaggcacaaatagccactgaagtaggactcgatcgt
tacatccattttggaaatggaccagtagtgccgaatctaaaaaagaaaaacttgtctgat
ttgttcgaagcttttctggccgcgttgtttgtcgacaaagggattgagccagtcgaagtt
ttttgcaaagtttgtctattcccaagacttagggacgtgattatcaatcaggaatggtta
gatgcgaagtcgcaacttcaaagctgctgtattgcgcaatcaaagcacgacaaacttccc
gtttacaaagtggtgaattctgtaggatcagcgaacatgaagcattatactgttgctgtt
tattttgatggtaaaagattggcaacaggttctggaaatagcattcacgaagccgaaatg
aacgctgctataaaaggcctggaagtcgcacatattccagaaaaaattagacaaaaaatc
gtaatgaagaaaagcaaagaagatacctatcgaaaatga
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integrated database retrieval system
