Xenia sp. Carnegie-2017 (soft corals): 124438399
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Entry
124438399 CDS
T08024
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124438399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xen03041
]
124438399
Spliceosome [BR:
xen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124438399
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
PRP4
Beta-prop_EML
ANAPC4_WD40
NBCH_WD40
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_WDR19_1st
eIF2A
WD40_like
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_HPS5
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
124438399
NCBI-ProteinID:
XP_046844488
LinkDB
All DBs
Position
Unknown
AA seq
495 aa
AA seq
DB search
MSDDDIDVPAIKKQRIFYGSLEDTIRELEKEHLKKTENANINVSDGQVLELSDDKNTERY
QQLLADFEKRKKARTAVVPTNDVEVKARLRELEEPICLFGEGPAERRDRLKALIAEYGVE
IEKSSEVDVKPDKKDDVVQEVWYHEGPPELKVSRMWIANFSLSRANERLKKARVLHARPD
AEKAAKTQELHKKLRALTNSCSQIGDDRPLSFCQFSPNSKILATCSWSGLCKLWSVPDCS
LIKTLRGHNSRVGAIVFHPQATISLETNVPSMASCGTDGDVRLWNLESETPIANIEGHDK
RVSRIAYHPSGRFLATCCFDYSWRLWDLNQLTEVLHQEGHSREVYHISFHPDGSLAGTCG
LDARGLIWDLRTGQCVMTLDGHLQKVLAIDFAPNGYHVATGSEDQKVMIWDLRKRKSIYT
IPAHTNLISYVKFHDQYLLTGSYDCKVKVWTHPGWIPLKTLAGHEQKVSCVDLSPDGHYI
ASSSFDRTFKLWSAE
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgatgatatagatgtccctgcaataaagaaacaacggatattttacggcagt
cttgaagacacaatcagagagttagaaaaagagcatttgaagaagacagaaaatgcaaat
atcaatgtttctgatggccaagtccttgagttatctgacgataaaaacacagagcgatat
cagcaattgttggctgattttgagaaacgaaagaaggctcgtacagctgttgttcctact
aatgatgtagaggtaaaggcaagattacgagaactagaagaaccaatatgtctgtttggt
gaaggtccagcagaaagacgggatagattgaaagctctaattgctgaatatggtgttgaa
attgaaaaaagttcagaagtggatgtcaaaccagataaaaaggatgatgttgtacaagag
gtttggtatcatgaaggtccacctgaactcaaagtttcaagaatgtggattgcaaacttt
tctttatcacgggcaaacgagagattgaagaaagctcgagtgttgcatgcaagacctgat
gcagaaaaggcagctaaaactcaagagcttcataagaagttacgagctttgaccaactcc
tgtagtcaaattggtgatgaccgtcccttgtccttttgtcaattttccccaaactcgaaa
attctggcaacttgctcatggagtggattatgtaaactgtggtctgtccctgattgttca
ttgataaaaacattacgtggacacaattcaagggtaggagctatagtatttcacccacaa
gccaccatttccttggaaacaaatgtaccatctatggcatcgtgtggtacagacggagat
gttcgtttatggaatttggaatctgagacaccaatagccaacatagagggtcatgataaa
cgcgtttccagaattgcttaccatccatcaggaagatttttggcgacgtgttgttttgat
tattcctggagactgtgggatctcaatcagttaacggaagttttacatcaggaaggacat
tcacgtgaagtttaccacatttctttccatccagatggatcattggctggaacatgtggt
ctggatgcgcgtggtttgatatgggatctgaggactggacaatgtgtaatgacattagat
ggtcatctgcaaaaagtattggctattgactttgctcccaacggatatcacgtagctact
ggtagtgaggatcaaaaagttatgatatgggacttacgaaaacgaaaatcaatttatacc
attccagctcatacgaatctcatatcttacgtgaaatttcatgatcaatatttactaact
ggatcttatgattgtaaagtgaaggtatggacacatccaggttggataccgttaaaaact
ttggctggacacgaacaaaaagtctcttgtgttgatctttctccagatggtcactacata
gcgtccagttcattcgacagaacatttaaattgtggtcggcggagtaa
DBGET
integrated database retrieval system
