KEGG   Xenia sp. Carnegie-2017 (soft corals): 124439243
Entry
124439243         CDS       T08024                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
xen  Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:xen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124439243
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xen04121]
    124439243
Enzymes [BR:xen01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     124439243
Ubiquitin system [BR:xen04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    124439243
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     124439243
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EIPR1 EIF3I Beta-prop_RIG_2nd zf-C3HC4_2 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_EML Beta-prop_CAF1B_HIR1 zf-RING_2 Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd WD40_like zf-RING_UBOX PEP5_VPS11_N zf-C3HC4_3 Beta-prop_Vps41 WD40_RFWD3 zf-C3HC4_4 zf-RING_5 Beta-prop_SCAP Beta-prop_WDR75_1st RING_XB3-XBAT31 Beta-prop_IFT122_1st Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Beta-prop_SPT8 WDR54
Other DBs
NCBI-GeneID: 124439243
NCBI-ProteinID: XP_046845425
LinkDB
Position
Unknown
AA seq 671 aa
MSASAGDRATSSRRRKRPHPPIHDGILNSFSDKDSDFVCPICFDTIEEAHMTKCGHSFCY
KCICRSLQESNKCPKCNFVIDKQDQIFPNFLLNDLILKRKQQRVGRNMQINQPLSEFNFS
ELQEIVCGDSNLKVSDINSLLEILSVRKYQLEADSTATQNEILKDFLKQVKRHKQEQLDQ
LTQEVKLIDDDLRRVEDIIAVHQSHHVSILDQYHAVPTTPTVKSFPTNLEEDAARIDWVS
HSAISVKPEPPYWKVPLDMKNSCASDMNNSVQPNELPQDGFNGSQHGAKHLWSSATLAAR
RKRVHQHFDDLEKCYFAIRQGEIPGGSDVTDGLEFFTESLSKFTRFSGFRPLATLSYASE
VHNGSSIVSSIEFDRDNDYFAIAGVTKKIKVFEYGVVIRDVVDVHYPVIEMVCNSKISGT
CWSTYHKGLLASSDYEGTVTLWDAFTGAKNRSFQEHEKRCWSVDFNHVDPKLLASGSDDA
KVKLWSTGTEHSVSCIEAKANVCCVKFNPESRYHLAFGSADHCVHYYDLRNSNKPLTVFK
GHRKAVSYAKFVSAEEIVSASTDSQLKLWNINKPHCLRTFKGHSNEKNFVGLSTNGDYIA
CGSENNSLYLYYKGLSKQLLTFKFDTVRSVLEREKKDEEANEFVSAVSWRTGSNVVVAAN
SQGTIKVLELV
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgtcggcttcggcgggtgacagagcaacgagcagccgaaggcgcaagagacctcatcca
cctattcatgatggtatactaaactcctttagcgacaaggacagcgattttgtgtgtccg
atttgttttgatacaattgaagaggctcatatgactaagtgtggccacagcttttgttac
aagtgtatttgtcgaagcctccaagaaagcaacaaatgtccaaaatgtaactttgttatc
gacaagcaagatcagatttttcccaatttccttttaaatgatcttatattgaaaagaaaa
cagcaaagagttggaaggaacatgcaaattaatcaacctttaagtgaatttaatttttcg
gaacttcaagaaattgtatgcggcgattcgaatcttaaagtgtcagatatcaattcgcta
ttggaaatattgtcagtgagaaaataccaactagaagcggacagcactgccacacaaaat
gagatactgaaagattttttgaaacaagtcaaaagacataaacaagagcaactagatcaa
cttacgcaagaagtgaaacttattgacgacgatttaagaagagtcgaggatatcatagcc
gtccaccaaagtcatcacgtttcgatattggatcagtatcacgctgtaccaaccactcca
acggtgaaatcatttcccaccaatctagaagaagatgcagcaagaatagactgggtatcg
cactccgctatttctgtgaagccagagccgccatattggaaagtcccacttgatatgaaa
aacagttgtgcttccgatatgaataactccgtgcaacctaatgagttaccacaggatggc
ttcaatggtagtcaacatggtgctaaacacctttggtcgagtgcaactctagctgcaagg
cggaaaagagttcatcagcatttcgacgatctcgaaaagtgttattttgccattcgacaa
ggtgaaattccgggaggctctgacgtcacggatggactggaattttttacggaaagtttg
tcgaagtttacacgtttcagtggatttcgtcccctggcaacactaagctacgccagtgaa
gttcataatggctcgagcatcgtttccagcatcgagtttgatcgcgacaacgattatttt
gcgatcgctggagtgacgaagaaaatcaaggtattcgaatacggagttgtcattcgcgat
gtcgttgacgtacattatcctgttattgaaatggtctgtaattcaaagatcagcggaaca
tgctggagcacttatcacaaaggtttactagcaagcagtgactacgagggtaccgtcacg
ttatgggatgcttttacaggagccaaaaatcgctcgtttcaggaacatgaaaagagatgt
tggagtgtcgacttcaatcacgtcgatcccaagctgcttgcgtcgggttccgacgatgcg
aaagtgaaattatggtctaccggcaccgaacattctgtttcgtgtatagaggcgaaggcc
aacgtgtgttgcgtcaaattcaatcctgaaagtcgctatcacctggctttcggctcggca
gatcattgtgttcattactatgacctccgaaacagcaataaaccactgacagtttttaaa
ggtcatcgcaaggctgtgtcttatgctaaatttgtcagtgccgaagaaatcgtctctgct
tcaactgacagtcagctgaaactatggaatataaataaaccacactgtttacgaacattt
aaaggacattcaaatgagaaaaattttgttggtctttcaacaaatggtgactatattgcc
tgtggcagtgaaaataactcgctttacttgtactacaaaggtctttcgaaacagttgtta
acgttcaagtttgacaccgtgcgaagcgtcttggaaagagaaaaaaaagacgaagaggcc
aatgaatttgttagcgccgtatcgtggagaactggatcaaatgtcgtcgtggctgcaaat
agtcagggaactatcaaggtcttggagcttgtttag

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