Xenia sp. Carnegie-2017 (soft corals): 124439329
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Entry
124439329 CDS
T08024
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03440
Homologous recombination
xen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124439329
03450 Non-homologous end-joining
124439329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xen03032
]
124439329
03400 DNA repair and recombination proteins [BR:
xen03400
]
124439329
DNA replication proteins [BR:
xen03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
124439329
DNA repair and recombination proteins [BR:
xen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
124439329
BRCA1-C complex
124439329
NHEJ (non-homologous end-joining)
MRX complex
124439329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SMC_N
SbcC_Walker_B
Rad50_zn_hook
AAA_29
AAA_13
ABC_tran
AAA_16
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
124439329
NCBI-ProteinID:
XP_046845509
LinkDB
All DBs
Position
Unknown
AA seq
1299 aa
AA seq
DB search
MSQIDKIQVEGIRSYCEPAVVEFFTPLTLIVGTNGAGKTTIIEALNYITTGDMPPNSKGA
AFVCDPKVVGEQEVKGQVKLMFRDISGHRMIVTRSLVSTQKQKKIECKSIENVIKRKVND
DWRSISSRCTDINREMISLLGVSKPVLDCVIFCHQEDSLWPLSEGKALKTKFDDIFSATK
YIKALEAIRKFRKEQSNELKVFNTQLEYLKENKFKANEISQNLERTKELLEKKEQEIDDI
VNSMMPVESRLIELSKIQQSINELERRLDSHLSTKKSIVEVNKDIGGKISKFFQGTREEL
EKLQEILKDIQLEEKIQQKDVKCSALNSKKNKILVNRGKLQEEFDRHKQNIEQRDFMIVE
QSKSLQLKGFESSPFSDEQISSFKEKARECYQKIKTEGIELKEKYQRRIQSAQSKIDDKK
KSLYQFEETIRVKNDMLTENQKKLQKIRQDLSNVSTSEIKVQRIGKDLIAAERELEDTKA
AGNTGEWKTEVEKSQGEKRQVEAELMRLREEQQMMHLNSSIQAELDIKRKERDLKEDAIK
EVNYKHEEELKSXLGSIGPTDNLKNRLNEFLKKKRSEISDTNGKIQTLKQKQSSKLAEKR
IIQKHVENLTKEKDGYERNLKEACGNEKYENKKKNLYDRIEEAKSKCSQLTAFETIYKKY
VTTMEDKKKDPCCPLCHRQFNTLQEMQNLVTELKEKIGRVPDKMATQMAELENDEKVYEN
LQKLQFDKDNLEDIENKKLPLEKEKLIAISEDCDEIKNSIEELEDVLLVIDNEECRAAKI
EPDLLMLEENEKSSKSLDREIRLLENKLDGVAPGRSMQLVTNEISDCQDKVDNLNRIIER
KRSQISNQESRLARLTSNVNELTSEKLRLSGELQRRSNLEKQKDDLTVANMEHDRDVREA
KRIWNQSRKSYLSLRKNAYHLLMNKTTKLIKMNEVKNNAGKFKEKMNEIQRYVDENRESF
LMQVEKDLTLVEDEINDMNEERGNLLLQMDKLKDDLSQQKVRARELQDNIQFVANEEKIS
TLEREINGIRSEQESLGDIDRLSREQNNLSRRLEEYKTRKATCTGERTGHEREMQRYKQD
LSGSLYKDAARKYHNKLIEIKTTELANDDLEKYYKALDRAIMKFHSIKMSEINKIIKEYW
INTYKGNDIDTIEIRSDEDSDGSLATRRNYNYKVVMLKGDVALDMRGRCSAGQKVLASLI
IRLALAETFCLNCGVLTLDEPTTNLDEENIESLANQLASIVRTRNPQKNFQLVVITHDEH
FVELLSQADFVEYYYRVAKDENGLSRIYKQSTSGVNENV
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagatagacaaaattcaagtcgaaggaattcgcagctactgtgaaccagccgta
gttgagttttttacacctctcacgttaattgttggaacaaacggagctggaaaaacgacg
attattgaagctttgaattacataacaactggcgatatgccacctaacagcaaaggtgct
gcatttgtttgtgatcctaaagtggtcggtgaacaagaggttaaaggacaagtaaagttg
atgtttagggatataagtggacatagaatgattgttacaagatcccttgtatctacccag
aagcaaaagaaaattgaatgcaaatctattgagaatgttatcaaaagaaaagtgaatgat
gattggcgaagtatcagctcaagatgtacagacattaacagagagatgatatcgctgctt
ggtgtgtcgaaaccagtgctagactgtgttatattttgccatcaagaagattcactttgg
cctctaagtgaaggaaaagctctcaaaacaaaatttgatgatatattttctgctacaaaa
tatatcaaagcattagaggcaatacgtaagtttcgtaaagagcaaagtaatgagctgaaa
gtatttaacacgcaactggagtatttgaaggaaaataaatttaaagcaaacgagatttct
caaaacttggaaaggaccaaagaactgcttgaaaaaaaagaacaagaaattgatgacatt
gttaactcaatgatgcctgttgaatctagattaattgaactctcgaaaattcagcaatct
attaatgagctcgaaaggcgtttagattctcatttgtccacgaagaaatcaattgtggaa
gttaataaagatataggaggaaaaatctcgaagttctttcaaggaactagagaagaactt
gagaaattgcaagaaattttgaaggacattcagctggaagagaaaattcaacaaaaagat
gtaaagtgttctgctctaaattctaagaaaaataagattctagtaaatcgtggcaagttg
caagaagaatttgataggcacaagcaaaacatagaacagcgagatttcatgattgttgag
caatctaaatctttgcaacttaaaggtttcgagtcttcgccattctctgatgaacaaatt
tcgagttttaaggaaaaagccagagaatgctatcagaaaataaaaacggagggcatagag
ttaaaggaaaaatatcagcgacgtattcagtcagctcaaagcaaaattgatgataaaaag
aagtcactttaccagtttgaagaaacaatcagagttaaaaatgatatgcttactgaaaat
cagaagaaactacaaaaaattcgtcaagatctgagcaacgtcagtacttctgaaataaaa
gtacagagaattggtaaagatttaatcgccgctgagagagaattggaggataccaaagct
gctggtaacactggagaatggaagactgaggttgaaaagtcgcaaggagaaaaacgtcag
gtcgaagcagagttaatgcgtttacgcgaagagcagcaaatgatgcatctcaactcatcg
attcaagcagaattggatataaaaagaaaggaaagagatttgaaagaagatgccattaaa
gaagtgaattacaaacatgaggaagagttgaagtctntacttggttccattggtcctaca
gataacctgaaaaacaggctaaacgagttcctaaagaagaaaagatcggagataagcgat
acaaatggaaaaattcaaacattgaaacaaaaacaatcttctaaacttgccgagaagaga
attatccaaaaacatgttgaaaatttgactaaagagaaagatggatatgaaagaaacctc
aaagaggcttgtggtaacgaaaaatatgaaaataagaaaaagaatctctatgaccgtata
gaagaagcgaaaagcaaatgtagtcaactaacggcatttgaaacaatttacaaaaagtat
gtcacaacaatggaggacaagaagaaagacccatgctgtcctctgtgtcatcgacaattc
aacaccttacaggaaatgcaaaatcttgttaccgaattaaaagaaaaaatcggtcgagtt
cctgacaagatggctacacaaatggcagaactggaaaatgatgaaaaagtctacgaaaac
ttgcagaaattacaatttgataaagataacctcgaggatattgaaaataaaaagttacct
ttggagaaagagaaattaattgcaatatctgaggattgtgatgaaattaaaaacagcatt
gaggagttggaagatgttcttttggttatcgataatgaagaatgtcgagcagcaaaaatt
gaacctgatctcttgatgttggaagaaaatgaaaaatcatcgaagtctttagatcgagag
ataagactattggaaaataagttagacggagttgccccaggtcgtagcatgcaactggta
acgaacgaaatatcagattgtcaggataaagtagataatttaaatcgcatcatcgagcgt
aaacgaagtcaaatatctaatcaagaaagtcgtctggcaaggctaacaagcaatgtcaac
gaacttacatctgaaaagctacggttgagcggtgagctgcaacgaagatcaaacttagaa
aaacagaaagatgatcttactgttgctaacatggaacacgatagagatgttcgggaggca
aaaagaatttggaaccaatcaaggaagagttatttgagcttgagaaagaacgcgtatcac
ttgttaatgaacaagacgaccaaattgatcaaaatgaacgaagtaaagaacaatgcagga
aaattcaaagaaaaaatgaatgaaattcagagatatgtggacgaaaatcgagaaagtttt
ttgatgcaagttgaaaaggatttgactttagtagaagacgaaataaatgatatgaatgaa
gaaagaggaaatcttctcttacaaatggacaaattaaaagatgatctatctcaacaaaag
gtacgcgctcgcgaacttcaagataacatccaatttgttgcaaatgaagaaaagatttca
actcttgaacgagaaattaatggcatccgctcagagcaagaaagtctgggagatatcgat
cgactgagcagggaacaaaataatttatcgcgaagattagaggaatataaaacgcgaaaa
gccacgtgcaccggcgagaggactggacacgaacgtgaaatgcaaagatacaagcaggat
ttgagtggatcgttgtacaaagatgccgctaggaaatatcataataaacttattgaaatc
aaaacgactgaattggcgaatgatgatttggagaagtattacaaggcgctggacagagcg
atcatgaaatttcacagcataaaaatgtcggaaatcaacaagatcatcaaagaatattgg
atcaacacttataaaggaaatgacatcgacaccattgaaatacgttcagatgaagactca
gatggttctttagcaactagacggaattacaactataaggttgtcatgttgaagggtgac
gttgctttggacatgcgtggtcgttgcagcgctggacaaaaagttctcgcgtcgttgatc
ataagactggcactggcggaaacattttgtctcaactgcggtgtgctgacgttagacgaa
ccgacgactaatcttgatgaagaaaacattgagagccttgccaatcagctggccagtatt
gttaggacgaggaatcctcagaagaattttcagttggtggtcataactcacgatgaacat
tttgttgagttactgagtcaggcggattttgttgaatattattatcgtgttgctaaagat
gaaaatggtctctcgaggatttataaacaaagcacatctggagtaaatgaaaatgtttga
DBGET
integrated database retrieval system
