Xenia sp. Carnegie-2017 (soft corals): 124439538
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Entry
124439538 CDS
T08024
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124439538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124439538
03041 Spliceosome [BR:
xen03041
]
124439538
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124439538
Spliceosome [BR:
xen03041
]
Complex B
Other components
Prp19-related factors
124439538
Complex C
124439538
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
TPR_15
TPR_12
ARM_TT21_C
RPN7
ARM_TT21
Ribosomal_L18p
TPR_1
Motif
Other DBs
NCBI-GeneID:
124439538
NCBI-ProteinID:
XP_046845740
LinkDB
All DBs
Position
Unknown
AA seq
862 aa
AA seq
DB search
MPVSSNISRNLIIEEEDLPYEEEILRNPYSVKCWSRYLEHKKSAPKSVLNLVYERALKEL
PGSYKLWYNYLKECRKQVRGKPITETCFEDVNNTFERALVFMHKMPRIWLDYCQFLMDQH
LITRIRRTFDRALRALPITQHYRIWPLYLKFVRSYPIPETAVRVYRRYLKLQSNNAEDYV
DYLKSVGRLDEAATRLATIVNQDKFVSKEGKSNHQLWHELCQLISKNPDKVKSLKVADII
RGGLRRFTDSLGQLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFGQIFDAYAQFEE
SMINTKMEGTDGEDMDEEEEIDLELRLARFENLMDRRPLLLSSVLLRQNPHNVHEWHKRV
KLFEGKPKDVINTYTEAVQTVQPKQATGKPHTLWVEFAKFYEKHKQIAEARVIFEKATKV
SYRRVDDLASVWCEYAEMEIRNENYKKALDVMKKATAMPSSRTSFYDETESVQKRLHKSL
KVWSMYADLEESLGTFESTKAVYDRILDLKIANPQIIINFAVFLEEHHYFEESFKVFERG
VAMFKWPNVFDVWNTYLMKFIKRYGGTKLERIRDLFEQALEKCPAKFAKGSTETIFSTFY
LMYARLEEDHGLARHAMAIYDRATRAVLPEEQFEIFNIYIKRAAEIFGVTHTREIYEKAI
EVLGDDQAREMVFRLNDREMCTRFAELERKLGEIDRARVLYMHASQMADPRTTASFWKTW
HDFEVHHGNEDTFREMLRIKRSVQAKYNTQVNFMSAQMLAASQAMSDAATGMSADDMENL
EKQARAMAEQAKKNQVKPKRDVLFVRGEATDEDNLEALARIANPEEISIDEDDEDEDAKI
EEVQLEQQMVPSKVFGSLIKDD
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtttcttccaatatcagcaggaatcttataattgaagaagaagatcttccttac
gaagaggagattctgagaaatccatattctgtaaaatgttggtcacgatatcttgagcac
aagaagtctgcaccaaaatctgtcttgaatcttgtttatgaacgagctttgaaagagctt
ccaggaagctacaaactttggtataattacttgaaagagtgtagaaagcaagtacgcgga
aaaccaatcacagaaacttgttttgaagatgtaaacaacacctttgagcgtgctcttgtg
ttcatgcacaagatgccacgtatatggttagattattgccagtttttaatggaccaacat
cttatcactcgtataagaagaacatttgatcgtgctttgagggcattgccaataactcaa
cattatagaatatggcccctttacttgaagtttgttcgttcttatccaattcctgagacg
gccgtccgtgtctacagaagatatctaaagttacaatccaacaatgctgaagattatgta
gactatctcaaaagtgttggaaggttggacgaggcagctacaagactggcaactattgtc
aatcaggataagtttgtgtcaaaagagggaaaatcaaatcatcagttgtggcacgaacta
tgtcagctaatctccaaaaatcccgacaaggttaaaagtctaaaagttgctgatattatt
cgtggtggcttgagacgatttacagatagtttgggtcaactatggtgttccttggcagat
tattacatccgtagtggtcattttgaaaaggcacgtgatgtttatgaagaagcaattcaa
actgttatgacagtcagggactttggacagatatttgatgcgtatgctcaattcgaagaa
agtatgataaacacgaagatggaaggaacagatggggaagatatggatgaagaagaagag
attgatcttgaactgcgtcttgcaagatttgagaatttaatggaccgtagacctttactc
ctgagcagtgttcttcttcgtcaaaatcctcataatgttcacgaatggcataaacgagtg
aagctgtttgaaggcaagccaaaagatgtcattaacacgtatactgaagctgtgcaaacc
gtccagccgaagcaagccacagggaagcctcatactctttgggtggagttcgctaagttt
tacgaaaaacataaacagatcgctgaggcaagagttatatttgaaaaggcgacaaaagtg
tcgtatcgtcgtgtcgatgatcttgcaagtgtttggtgtgaatacgcagaaatggagatt
cgaaatgaaaactataaaaaagctttggacgtaatgaaaaaggcaaccgcgatgccatcc
agcagaactagtttttatgatgagacagaatctgttcaaaaacgcctccataaatcactg
aaggtttggtcaatgtatgctgatttggaggaaagtttagggacatttgagtcgaccaaa
gccgtttacgatcgcattttggatttaaaaattgccaaccctcagattatcattaacttt
gctgtatttttggaggaacatcattattttgaagaatcctttaaggtgttcgaacgtggc
gttgcaatgtttaaatggcccaatgtttttgatgtttggaacacgtacttaatgaagttt
atcaaacgatatggtggaactaaacttgagcgtattcgtgatttattcgaacaagctttg
gaaaaatgtccagcaaagtttgctaaaggttcaacagaaacaattttttcaaccttttat
ctgatgtacgcacgtctcgaagaggatcacggtctagctcgtcatgcaatggccatttac
gacagagcaacaagagcagtgctgcctgaagaacaatttgagatcttcaatatttatatc
aagagagctgctgaaatatttggtgttacacatacaagagagatttatgaaaaagccatc
gaggttcttggtgatgaccaggctcgtgagatggtctttcgtctaaatgacagagaaatg
tgcactcgctttgctgaacttgaacgtaaacttggagaaatagatcgcgcacgtgttctg
tacatgcatgcttcacaaatggccgatccaaggacgacagcatccttttggaagacttgg
catgactttgaggttcatcatggtaacgaagacacttttcgtgagatgctgcgcattaaa
aggagcgtacaggccaagtataatacgcaggttaacttcatgtccgctcaaatgcttgct
gcatctcaagcaatgtctgatgcggcaaccggtatgtctgcggatgacatggagaatttg
gaaaaacaagctcgagcaatggctgaacaagcgaaaaagaatcaagtgaagccgaaacgt
gatgttctttttgtgagaggcgaagcaactgatgaggacaatttagaagcgttggcaaga
atagcgaatccagaagagatctcaattgatgaagacgatgaagacgaagatgcaaagatt
gaagaagttcagcttgaacaacaaatggtgccttcaaaggtttttggaagccttataaaa
gacgactag
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