KEGG   Xenia sp. Carnegie-2017 (soft corals): 124439553
Entry
124439553         CDS       T08024                                 
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B-like
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]
Organism
xen  Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03013  Nucleocytoplasmic transport
xen03015  mRNA surveillance pathway
xen03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124439553
  09122 Translation
   03013 Nucleocytoplasmic transport
    124439553
   03015 mRNA surveillance pathway
    124439553
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xen03019]
    124439553
   03041 Spliceosome [BR:xen03041]
    124439553
Enzymes [BR:xen01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     124439553
Messenger RNA biogenesis [BR:xen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     124439553
Spliceosome [BR:xen03041]
 Complex C
  Other components
   EJC/TREX
    124439553
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    124439553
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Thioredoxin_6
Other DBs
NCBI-GeneID: 124439553
NCBI-ProteinID: XP_046845764
LinkDB
Position
Unknown
AA seq 429 aa
MAADHEDGDVSELLDYEEEEAEAPNAVGAKDSKKDVKGAYVSIHSSGFRDFLLKPELLRA
ILDCGFEHPSEVQHECIPQAILGMDIVCQXKSGMGKTAVFVLATLQQIEPVDGQVSVIVL
CHTRELAFQICKEYERFSKYMNSLKVGVFFGGINIKKDQQTLKANCPHIVVGTPGRILAL
AREKSLNMKHIKHFILDECDKMLEQLDMRRDVQEIFRTTPHEKQVMMFSATLAKDIRPIC
KKFMQDPMEVYVDDETKLTLHGLQQYYVKLRDSEKNRKLFDLLDILEFNQVIIFVKSLQR
CMALSQLLVEQNFPAIGIHRGMAQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIV
FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNDVQDRFEVNIGELPQEID
ITSYLEQAR
NT seq 1290 nt   +upstreamnt  +downstreamnt
atggctgctgatcacgaagatggcgatgtttctgagttgttggattatgaagaagaagaa
gcagaagcccccaatgctgttggtgccaaggattcaaaaaaagatgtgaaaggcgcatat
gtcagcattcatagctcaggattccgagatttcctgttaaaaccagaattgttgcgagct
attctcgattgcggttttgaacatccaagcgaagttcagcatgagtgtattcctcaagct
attcttggaatggatattgtttgccaangcaaaagtggtatgggaaagacagctgttttt
gttctcgccactcttcaacagattgaacctgtggatggtcaggtcagcgttattgtgttg
tgtcatacacgtgagttggcatttcagatttgtaaagaatatgaaaggttttcaaagtac
atgaacagtctcaaagttggtgtcttctttggtggcattaatatcaagaaagatcagcaa
accctcaaggctaattgtcctcatattgtggttggaactcctggtagaatcctagctttg
gctcgtgaaaaatctctcaatatgaaacatataaagcattttattcttgatgaatgtgat
aagatgcttgaacaacttgacatgcgtcgagatgttcaagagatttttcgtactactcca
catgagaagcaagtgatgatgttcagtgctacacttgcaaaagatatccgaccaatttgc
aagaagttcatgcaagatcccatggaagtttatgttgatgatgaaaccaaactgactcta
catggtttgcaacagtactacgtgaagcttcgcgatagtgaaaaaaaccgcaaacttttt
gatcttcttgatatattggaattcaatcaggtcattatttttgtgaaaagcctgcaaagg
tgcatggcactttcacagttattggttgaacaaaatttccctgccattggtattcatcgt
ggaatggcacaagaggaaaggttgtcacgttatcaacagtttaaagatttccaaaaaaga
attttggttgcgacaaatctgtttggtcgtggtatggacattgagcgagttaacattgtt
tttaattatgacatgcctgaggattcggacacatacctacatagggttgctcgtgctgga
agatttggtacaaaaggtcttgctattacctttgtttctgatgaaactgatgccaaagta
ttaaatgacgttcaagatagatttgaagtgaatattggtgaattacctcaggaaatagat
attacttcgtatttggagcaagccagataa

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