Xenia sp. Carnegie-2017 (soft corals): 124439553
Help
Entry
124439553 CDS
T08024
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03013
Nucleocytoplasmic transport
xen03015
mRNA surveillance pathway
xen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124439553
09122 Translation
03013 Nucleocytoplasmic transport
124439553
03015 mRNA surveillance pathway
124439553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124439553
03041 Spliceosome [BR:
xen03041
]
124439553
Enzymes [BR:
xen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124439553
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124439553
Spliceosome [BR:
xen03041
]
Complex C
Other components
EJC/TREX
124439553
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124439553
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Thioredoxin_6
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124439553
NCBI-ProteinID:
XP_046845764
LinkDB
All DBs
Position
Unknown
AA seq
429 aa
AA seq
DB search
MAADHEDGDVSELLDYEEEEAEAPNAVGAKDSKKDVKGAYVSIHSSGFRDFLLKPELLRA
ILDCGFEHPSEVQHECIPQAILGMDIVCQXKSGMGKTAVFVLATLQQIEPVDGQVSVIVL
CHTRELAFQICKEYERFSKYMNSLKVGVFFGGINIKKDQQTLKANCPHIVVGTPGRILAL
AREKSLNMKHIKHFILDECDKMLEQLDMRRDVQEIFRTTPHEKQVMMFSATLAKDIRPIC
KKFMQDPMEVYVDDETKLTLHGLQQYYVKLRDSEKNRKLFDLLDILEFNQVIIFVKSLQR
CMALSQLLVEQNFPAIGIHRGMAQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIV
FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNDVQDRFEVNIGELPQEID
ITSYLEQAR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgatcacgaagatggcgatgtttctgagttgttggattatgaagaagaagaa
gcagaagcccccaatgctgttggtgccaaggattcaaaaaaagatgtgaaaggcgcatat
gtcagcattcatagctcaggattccgagatttcctgttaaaaccagaattgttgcgagct
attctcgattgcggttttgaacatccaagcgaagttcagcatgagtgtattcctcaagct
attcttggaatggatattgtttgccaangcaaaagtggtatgggaaagacagctgttttt
gttctcgccactcttcaacagattgaacctgtggatggtcaggtcagcgttattgtgttg
tgtcatacacgtgagttggcatttcagatttgtaaagaatatgaaaggttttcaaagtac
atgaacagtctcaaagttggtgtcttctttggtggcattaatatcaagaaagatcagcaa
accctcaaggctaattgtcctcatattgtggttggaactcctggtagaatcctagctttg
gctcgtgaaaaatctctcaatatgaaacatataaagcattttattcttgatgaatgtgat
aagatgcttgaacaacttgacatgcgtcgagatgttcaagagatttttcgtactactcca
catgagaagcaagtgatgatgttcagtgctacacttgcaaaagatatccgaccaatttgc
aagaagttcatgcaagatcccatggaagtttatgttgatgatgaaaccaaactgactcta
catggtttgcaacagtactacgtgaagcttcgcgatagtgaaaaaaaccgcaaacttttt
gatcttcttgatatattggaattcaatcaggtcattatttttgtgaaaagcctgcaaagg
tgcatggcactttcacagttattggttgaacaaaatttccctgccattggtattcatcgt
ggaatggcacaagaggaaaggttgtcacgttatcaacagtttaaagatttccaaaaaaga
attttggttgcgacaaatctgtttggtcgtggtatggacattgagcgagttaacattgtt
tttaattatgacatgcctgaggattcggacacatacctacatagggttgctcgtgctgga
agatttggtacaaaaggtcttgctattacctttgtttctgatgaaactgatgccaaagta
ttaaatgacgttcaagatagatttgaagtgaatattggtgaattacctcaggaaatagat
attacttcgtatttggagcaagccagataa
DBGET
integrated database retrieval system
