Xenia sp. Carnegie-2017 (soft corals): 124440521
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Entry
124440521 CDS
T08024
Name
(RefSeq) collagen alpha-1(III) chain-like
KO
K06237
collagen type IV alpha
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen04382
Cornified envelope formation
xen04512
ECM-receptor interaction
xen04518
Integrin signaling
xen04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124440521
04518 Integrin signaling
124440521
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124440521
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124440521
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xen04147
]
124440521
00536 Glycosaminoglycan binding proteins [BR:
xen00536
]
124440521
Exosome [BR:
xen04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124440521
Glycosaminoglycan binding proteins [BR:
xen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124440521
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124440521
NCBI-ProteinID:
XP_046846870
LinkDB
All DBs
Position
Unknown
AA seq
905 aa
AA seq
DB search
MSLDFIGENGPDGEPGLDGRQGPKGPYGAYGESGSIGKKGAKGLPGYPGYIRSIILPGRS
DNKGPGPNDNRNRIDIMPPQPGPPGKPGKPGIRGTDGKYGPLGPEGIVGNKGSQGAPGKN
GLRGNDGLSGNPGDHGNPGRPGTVGMKGAIGKDGNPGIRGRKGHAGWKGDVGFVGERGAQ
GEKGTAGENGDKGEAGTEGRDGVSGSMGPRGQYGKAGKKGPVGKDGVIGPKGRMGHHASH
GRRGPMGSRGQPGGLGLRGDTGIPGEHGRRGDMGPNGLPGSAGHVGPIGNPGYKGSMGDP
GLFGGQGKLGPMGNMGSVGSEGSLGNRGDKGETGETGSRGERGDKGSTGDQGSLGVQGSN
GGEGTQGQYGEPGADGNDGLPGRKGDDGGNGIRGASGQKGYKGNDGSIGFSGSRGKRGKK
GRQGSPGKSGSVGKAGELGHNGNIGVHGRQGVPGLQGPPGILGVNGQAGKDGIQGKIGIS
GPAGPPGITGKDGDLGVIGPQGFMGPQGERGDRGSRGVPGVVGDDGDLGMPGKDGADGEV
GLAGDIGVSGPAGEKGEKGTEGGMGEDGEMGSPGFQGSAGGRGSVGEKGTSGPVGIIGIH
GSRGSKGMIGATGVLGQRGSKGAMGLPGKKGAPGVNGSPGMKGIDGPDGSDGDPGKRGGK
GPLGDTGKTGSSGQKGYQGARGDPGLQGSIGENGNPGIIGKRGLQGEIGQTGGKGETGDD
GLPGLAGLRGADGPPGNRGNAGQNGEDGFVGFAGPLGDKGEVGVPGKRGEQGSMGDLGIR
GTDGRKGFPGSQGYIGDRGSAGPMGERGSPGGHGEAGAQAGPGAPGVTGLPGLHGQPGTR
GNIGFRGQTGPVGPQGAMGEVGQTGKNGNDGKSGEQGSEGPKGIRGGQGRVENLENVDFL
VILET
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgtcattagatttcattggggaaaatggtcctgatggtgaacctggtcttgatggtaga
caaggtccaaagggtccatatggagcatatggtgaatcgggaagtataggcaagaaaggt
gccaaaggtcttcctggttatcctggttacattcgatcaattattctccctggaaggtcc
gacaacaaaggacctggtcctaatgataacagaaacaggatagacataatgccacctcag
cctggaccacctggaaaacctggaaaacctggaattcggggtacagatggtaaatatgga
ccattaggacctgaaggcattgttggaaataagggaagtcaaggtgctcctggtaaaaat
ggtctacgtggaaacgatggtttgagcggaaatcctggcgaccacggcaatcctggacgt
cctggtacagttggtatgaagggagctattggaaaagatggaaatcctggaattcgtggc
agaaagggtcatgctggatggaaaggtgacgttggatttgttggtgagagaggagctcag
ggagagaaaggtacggctggtgaaaacggtgataagggcgaagctggtacagagggccgt
gacggcgtttccggtagcatgggaccacgtggtcagtatggaaaagcaggaaagaaagga
ccagtggggaaagatggagttatcggtcctaagggtcgtatgggacatcacgctagtcat
ggtagacggggtcctatgggttcacgaggacagccaggtggcttaggactacgtggagac
actggcatacccggtgaacatggaaggcgcggtgacatggggccaaatgggctaccgggc
tcagctgggcatgtgggaccaatcggaaacccgggttacaaaggttcaatgggtgaccca
ggcctgtttggtggtcaaggaaaacttggtcccatgggaaatatgggctcggttggttct
gaaggtagtctaggaaatagaggggataaaggtgaaacgggtgaaactggaagtcgaggg
gaaagaggtgataaaggttcaacaggagatcaaggatcattgggtgttcaaggaagcaat
ggtggagaagggactcagggtcaatatggagagcctggtgctgacggtaatgatggtctt
cctggtagaaagggtgatgatggtggtaatggtattcgtggagcttctggtcaaaagggc
tataagggcaatgatggatcgattggcttcagtggaagcagaggaaaaaggggaaagaaa
ggacgacagggctctcctggaaaatctggctcagttggaaaagctggagaacttggacat
aacggaaatatcggtgtacatggtcgacaaggtgttccgggactgcaaggccctccagga
atcttaggtgttaatgggcaagcgggaaaagatggtattcaagggaaaattgggatttca
gggcccgcaggtccaccgggtataactggtaaagatggggatcttggagtgatcggtcct
caagggtttatgggaccacaaggagagagaggtgatcggggtagtcgcggtgttccagga
gtagtgggagacgacggagacttgggaatgccaggaaaagacggtgcagacggggaagtg
ggacttgctggcgacataggcgttagtggtccagctggagaaaagggtgagaaaggtaca
gaagggggaatgggagaagatggagaaatgggttcacctggttttcaaggttcagcaggt
gggcgaggaagcgttggagaaaagggtacttctggtcccgttggtatcataggtattcat
ggatcacgtggaagcaagggaatgattggagctactggtgtacttggtcaacgtgggagt
aagggtgcaatgggtcttcctggtaaaaagggtgctcctggtgtaaatggtagtcctggg
atgaagggcattgatggtccagatggttctgatggagatcctgggaaacgtgggggtaaa
ggtccccttggagatactggaaaaactggatcttcagggcaaaaaggatatcagggtgct
cgtggtgatccaggtttacaaggatctattggagaaaatggcaatccgggtatcatagga
aaacgtggtcttcagggtgaaattgggcaaactggaggaaagggagagacaggagacgat
ggattgccaggtcttgctggactgaggggtgcggatggaccacctggcaaccgtggtaac
gccggtcaaaatggagaagatggctttgtgggctttgctggtcctctgggagataaaggt
gaagttggtgtacctggtaagcggggtgagcaagggtcgatgggagatcttgggattcgt
ggaactgatggtcgaaagggctttcctgggtcgcaaggatatattggcgatcgtggttct
gctggtcctatgggtgagcgtggttctcctgggggtcatggagaggctggtgctcaagct
ggacctggtgctcctggagttactggtcttcctggtcttcatggacaaccgggaacaagg
ggtaatattgggttcagaggacagacaggccctgttggacctcaaggtgctatgggagaa
gtcggtcagactggaaagaatggaaatgatggcaaatccggagaacagggttctgaaggc
ccaaaaggaatacgtggaggacaggggcgagtggaaaacctggaaaacgtggactttctg
gtaattctggaaacttag
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