Xenia sp. Carnegie-2017 (soft corals): 124441102
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Entry
124441102 CDS
T08024
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124441102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xen03021
]
124441102
03019 Messenger RNA biogenesis [BR:
xen03019
]
124441102
Transcription machinery [BR:
xen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124441102
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124441102
U7-dependent histone pre-mRNA processing factors
124441102
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
124441102
NCBI-ProteinID:
XP_046847491
LinkDB
All DBs
Position
Unknown
AA seq
1203 aa
AA seq
DB search
MLSDLKRTLLTEFLQPTTCLLHENEDNDTKEPSKCEESTTDKVIDLLNQAQLAKKESKLH
YLKQVQELIVNKEPALLDNFLDEILIFQHDKTTEVRKYVLQFIEEACKKDVEILTKVIHT
IVLLINDPNVIVIKKVMLSLTQLYRIMLQFISKQKVIDENLKATWEILCMLKNQIMEKVQ
SDNDGIRTHAIKFMEMIVLAQSCKPQDTKDDDVISLDVVPRNHPVLSMTQLREEAGMTLE
ALLSLVASPNISSVNLMASMGTLAAIAKQRPAFMSLVVEAFESLHANLPTALSKSQVSSV
RKNLKLHLMNLLKNTAAVEYYPQITTLLTDLGASQSEMQKIWQKNLAKVNLESMKRPRNE
ATADTESPLTKRQKSGKSESSVGLTIIQAIEMTKEDLIPRLKNERVSELVIVSMLGLPDQ
MPTNFQETYTPIAAAGGMAQVTHLARLISAQMTNAGIGVGAEKMQQLKKARDAEKVQPPM
EIVPSHRYETSSSIPVIGSSTTGSMASQSLIKEDPSILHAKQENLVQESPFLRIMEHINK
EKGQAKKPAKSSSSLQTRRKIKPFKLHEVKQVLTQEEREKLILSAFRRILDAEKHCIQGG
KTKERLDIIVGLATQFGGHLRIALKNFIMLDPRARYELANLWIYHEFLAEESYRERVEQE
FLEGEELSDEQMMVNNSYNESLLALLRGFKERLDTKDKLISRLYLEAPRLTDESKLFLKE
YCEDLERSHVGFSTLRELILQRPANQVDYLNLLLELTSHYKEQVRVQAIYTAKKLHPHPN
LAVDIQQFALQSLRTLLLPKPPNKGAVEWTDEPIKLCLYLYLALLPLNHKLLHDLASLYT
QALPLVKRTILRHLEHPVRSIGMDSEELLKLVETCPSGAETLITRILHIITEKSSPSTAL
VKHVKDLYHKRASDVRLLIPVLTGLEKKEVIEVLPKLIKQSPNVVKEVFNRLLGCFHGES
TISSASPLTPSELLITLHNIEDKADMKSIIKAVGLCFAEKTIYTQEVLAVVLQQLMEKTP
LPTLFMRTVIQSLSVCPRLVGFAMNILSKLISKQVWKQPKVWQGFVKCCQMTKPQSYPIL
LQLPSRQLESVFELCPELKDLLRTHVEQFTPHQRALIPRSLIQILEKDAKQEETTTEKES
KEPNEAKLKTEVLPTTSDDTLTSKQETIKLQSQKRERGDDDGTQTEENEHKKSREESENQ
QGT
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcagatttgaagaggactttgcttacagagtttttacaacctacgacgtgtcta
cttcatgaaaacgaagataatgatacgaaagaaccttcaaaatgcgaagaaagtacaacg
gataaggtaattgatcttcttaaccaagcccagctggcaaaaaaggagagcaaactgcat
taccttaaacaggttcaagaattgatcgtgaacaaggaaccagcattattggataacttc
ctggatgaaattctcatttttcaacatgataaaacaactgaagttagaaaatacgtgctt
caatttattgaggaagcctgtaaaaaggatgttgaaatcttgacaaaagtcatccatact
attgttctgttgatcaatgatccaaatgtgattgtcatcaaaaaagtcatgttatcttta
acacaattgtatcgcatcatgctccagttcatcagcaagcagaaagttattgatgaaaat
ctcaaagcaacttgggagattttatgtatgttaaaaaatcaaatcatggagaaagttcaa
tcagataatgatggcattcgtactcatgcaatcaagttcatggagatgattgtccttgca
caatcatgtaaaccacaggataccaaagatgatgatgtcatttctcttgatgtggtacct
cgtaatcatccagttttgagtatgactcaacttcgtgaggaagcaggaatgactcttgag
gctttactcagtttagttgcttctccaaatatttcaagtgttaacctaatggccagtatg
ggtacactggcagccattgcaaaacaaagacctgctttcatgtcgttggttgttgaagct
tttgaatcgcttcacgccaatctaccaactgcactttctaagagtcaagtcagcagcgtc
agaaagaatttaaagcttcatcttatgaatttactaaagaatacggctgcagtggagtat
tacccacagataactacccttctcactgatcttggagcctcgcagagtgagatgcagaag
atctggcagaaaaatctcgcaaaagttaatttagaatctatgaagcgaccaagaaatgaa
gcaacagctgacactgaatcaccattgacaaaaagacaaaagtcgggaaagtctgaatct
agtgtcggattaacaattatccaagcaattgaaatgacaaaggaagacttaataccgcgc
ttgaagaacgagagagtctcggaactggtaatcgttagcatgctgggattacccgaccaa
atgccgactaatttccaagaaacatacactcccattgctgcagctggtggtatggcgcag
gttacgcatcttgcccgcttgatcagcgcacaaatgacaaacgcgggcattggtgttggc
gctgaaaagatgcaacaacttaaaaaggctagagatgcggagaaagttcagccaccaatg
gagatcgtaccaagtcacagatacgagacatcaagtagtatacctgttattggtagctct
acgacgggttccatggcaagccagagcttgataaaagaggatccgagcattcttcacgca
aagcaagaaaatcttgttcaagaatcgccattcttgaggattatggaacacatcaacaaa
gaaaaaggacaagctaaaaagcctgcgaaatcttcgtcttctcttcagacgagacgaaag
ataaagccttttaaactgcacgaagtgaaacaggttcttactcaagaagaacgagagaaa
ttgatactttccgcttttcgaagaattctcgacgcagaaaagcactgtattcaaggtgga
aaaacaaaggaaagacttgacattatcgttggtttggccactcagttcggtggacaccta
cgaatagcgttgaagaacttcataatgttggatccacgcgcaagatacgagctcgcaaat
ctctggatttatcacgagtttcttgcagaagaatcatacagagagagagttgaacaagag
tttcttgaaggggaagaactaagcgacgaacaaatgatggttaacaattcgtacaacgaa
agtcttcttgctttgttacgtggttttaaagaacgactcgacacaaaagacaagttgata
tctcgtttatatttggaagcgccaaggttgacggatgaatctaaactatttctcaaggaa
tattgcgaagatctggaacgtagccatgttggattttctacgcttcgggagttgatcctc
caaagacctgccaatcaagtggattatcttaatctccttttggaactcacgtctcattac
aaggaacaagttcgtgttcaagcgatttacacagcaaagaaacttcatccacatccgaat
cttgccgttgatattcagcaattcgccctacaatctctacggactctgttgcttccgaag
cctccgaataaaggagctgtggaatggactgacgaacctatcaaattgtgtttatatctt
tacctcgcattattacctttgaaccataaattgctgcacgatttggcaagtctctatacc
caagctttgcctcttgttaaacggacaattcttcgacatttggagcatcctgtacggtcc
ataggtatggattcagaagaattactgaaacttgttgaaacttgtccaagcggagctgag
acattgatcacgcgaatattacatatcattactgagaaatcctcgccatcaacagcttta
gtgaagcacgtgaaagatttgtaccacaagcgtgcatcggacgtgcgacttttgattccg
gttttgaccggtttggaaaagaaggaggtgatcgaagttttaccaaagttaataaaacaa
tctccgaatgtggtgaaggaagtcttcaacagattattgggctgttttcatggcgagtcg
actatctccagtgccagtccgctgacaccctcggaactgctgatcaccctgcataatatt
gaagataaagctgacatgaaatctataatcaaagctgtcggtttgtgttttgctgaaaag
accatttacactcaagaggttcttgctgttgtactgcaacagttgatggagaaaactcct
ttgcccacgttgtttatgagaacggttattcaatcattgagtgtctgtccacgtctcgtt
ggctttgccatgaatattctctctaaactaattagcaaacaggtgtggaaacaaccgaaa
gtgtggcaaggtttcgtcaaatgttgccagatgacaaaaccacagtcgtatcctatactg
ttgcaattaccatcaagacagcttgagagtgtgttcgagttatgtcctgaattaaaagat
cttcttcggactcacgtggaacaatttacacctcatcagagggcactcattccgcgctcc
cttattcaaatcttggaaaaagatgcgaaacaagaggaaacgacgacggagaaagagtcg
aaagaaccaaacgaagcaaaacttaaaactgaagtgttgccaacgacaagtgatgacact
ttaacgtcaaaacaggaaacaattaaactgcaatcacagaaacgcgagagaggcgatgat
gatggcacacaaacggaagaaaacgaacataaaaaatcacgagaagaaagtgaaaatcaa
caaggaacatga
DBGET
integrated database retrieval system
