Xenia sp. Carnegie-2017 (soft corals): 124442357
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Entry
124442357 CDS
T08024
Name
(RefSeq) collagen alpha-3(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen04512
ECM-receptor interaction
xen04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124442357
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124442357
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xen04147
]
124442357
00536 Glycosaminoglycan binding proteins [BR:
xen00536
]
124442357
Exosome [BR:
xen04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124442357
Glycosaminoglycan binding proteins [BR:
xen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124442357
Hyaluronan
Extracellular matrix or blood plasma proteins
124442357
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
VWA_3
DUF1194
Motif
Other DBs
NCBI-GeneID:
124442357
NCBI-ProteinID:
XP_046848815
LinkDB
All DBs
Position
Unknown
AA seq
1796 aa
AA seq
DB search
MDVVFTFGACGPNADDVFDKEKDMVSGFLETIKVADSYYGVIEYGENQANIMARLGDFRN
KERLNQFINTIPRSGEGRAIDKALEKARELLLGSGRNDARKALVIFANGKSSARLAELTK
EAKPLHDAGVKIIAVGIGDDVDDEELNSIATNKIIAQPYDEAAPLGHLLAHEVTEAPSKE
LVDVTFVMGSSGIEGDMIFEKEKEIIQSFVDALKSNDTQIAVVNYGNDDAKVEAKVGQFK
DKEDLMSCVNKQTRLGDGKALGKALDKTEKVLSETGRPGIRKAVVVFANGRSGSDNISLA
KKARDLHGNDVKVVAVGIGDDVNEDELQALANAGVIMAGRDSDSDVTAGTIVKYLEMISE
AAEDALDIAFAFGASGSDADLSFKKAKEMIKIFIDSLKVHDTQYGVIEYSNEARVHATFG
QFNRKDRLKAQISSIERRGEAVGLHKALTAAYDLLAKNGRRGARKTLIVFTSGKADASLN
EVRDSAKSLQDAGIKIVSVAIGDSADVSQLKEISTNEEVVKCELTGDSDAIIHRVSHDVV
SAELSGETVDIVFALGSAGSDAHMVFEKEKEMVATFVNSLDTANLRYALVNYGEDATLQA
NFNDHKEKYDFKEFLDTLAWPGHGVGLANALEKSAAVFKDSGRVNAKRVLVLFTNAQSNA
RAQDLQKYSRDLQETAVKVIVVAIGDDVNEEELSQLNGQPMVRHQVHEDLNVIAKTLACD
MLSNEADAVQTPVLSPIPKVKLDVVFAIGAAGKDANDVFEKEKLIVNSFIDNLKDNDAQF
AIIEFGNKASVKSNLGDEMNAGILAASVADLQRSGEGKCLDKALEQAVEVFHQKARAGSN
RVLIVLTNAKSSARTQDLKKHSQSLTDAGVKVQVVAIGNDINEDELVQITSNEIPLLRIQ
PYEDPHTVLKETAWIIGEKQDEYLDIVFAFGSFGEAAKEIFYKEKQLISSFIDSVQKPDT
RYGVIEIGPRAKVCAMIGQYRDHVRLKRHVNLVRRTGDATGLDHALDVAAGMFENQARPN
SRRVLVVFTNGKSGAKSEQVKQNSERLIKANVDIIVVAIGDDIDDEECQNVSCGNRPIVC
IDPEQNPRAFVYSIVKEIEEVKCVKPTDIVFVIGAAGNGAENIYNKNKEIISKYIEANKV
PNTMYSIVDYGPKAVVRSKFGENKQRAILLDHIENLQHPGDGKALDKALEQSLNLLENEG
RFGAKKRAVLFTNGNSGASPGHLKKYSSLLEDANVKIITVAVGDDVNDSEIRHVNSDEET
IVKVAVDDEPESAVFAVARLVQGPNKVKYDIIFAFGAMGESADMIHLKEKEMIGSFIDSF
AAGDYRYAVVEYGSKAYVKAKFDEIRGKDEMKEFVKNIKRSGEGKALDKALEQSHDLFKK
YGRPTAKNVLIVFTNGKCNARANELKKYATSLSELGTKLIVVAIGEEVSVDELLHVASNK
ESIVRAQPEDDCSQLFNSIVRDTIEERPVTDVDVVFALGTSGEHADEMFEKEKEFVNGFI
DASNYGDTDYAFIEFCDPLKLHFSFKDFNNNKDIKNKICSLSRHGDGTSMAEALRKAHEL
FTNDSRSSSHKVLIVMTNGHLSGRAGELRNGAKALQKIGVKVITVAIGDDVDHDVIRQLS
CDEGNVIHVKKDEDVGCLVYVITREAVKGTPVYDEVVKEETFLRQVFLQPRVNLILKPST
STTEQAQIDEEAKRLEREQLEAEKRAEEETLKFEEIERQLEEKEEEARLEIERLEIEELE
RKQKENLKGEKAQRKKKEEEEEELAMMQFAVATPETEIIRKAHERTLDLNEAVPES
NT seq
5391 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgtattcacgtttggagcctgcggtcccaatgccgacgatgtgtttgataag
gagaaggacatggtcagcggctttctagagacgatcaaagtcgcggatagttactacggg
gtgatagagtacggagagaatcaggcaaatataatggccagactgggtgatttcagaaat
aaagaaaggctcaatcagtttatcaatactataccacgtagcggtgaaggtcgtgctatt
gacaaggcattagagaaagcgcgggaattgttgctaggcagcggacgaaatgacgcgaga
aaagcgttggtgatttttgcgaatggaaaatctagtgctcgtcttgcagaattgacgaag
gaagcgaaaccgttacacgacgctggtgttaaaattatcgctgttggtattggtgatgat
gttgatgatgaagaactgaactccattgctacgaataagattattgctcaaccgtacgac
gaagctgctcctttgggtcatcttttggcacacgaagtcaccgaagctccgtcaaaggaa
ctcgtggatgtgacgttcgtcatgggatcatcagggattgaaggcgatatgatattcgag
aaagagaaggagataattcagtcgtttgttgacgctttgaaaagcaacgatacgcaaatt
gctgtcgtaaactatggaaacgacgacgcgaaagttgaagcaaaagttggtcaatttaag
gataaagaggatttgatgtcctgtgtcaataaacagacgaggcttggcgatggaaaagct
ttgggtaaagctcttgataaaaccgaaaaggttctttctgaaactggccggcctggaata
agaaaggctgtggtcgtgtttgcaaacggaaggtctgggtccgataatatcagtcttgcg
aaaaaagcacgtgatctacatggtaacgacgtcaaagttgtagcagttggtattggtgat
gacgtcaacgaggacgaactacaggctcttgcaaacgccggcgtcattatggcgggtaga
gattcagatagtgacgtcacagcgggaactatcgtgaagtatcttgagatgatctcagaa
gctgcagaagatgcgttagatattgcatttgcctttggtgcttctggatctgatgcagat
ctttcattcaagaaagcgaaggaaatgattaaaatcttcatcgattccctgaaagtccac
gatactcaatatggcgtcatagagtacagcaacgaggcaagagtccacgctacttttggt
cagttcaaccgcaaggacagacttaaagctcaaatttcgtccattgaaagacgcggcgaa
gctgttggacttcataaagcattaacggccgcttacgatctactcgcgaagaatggacga
cgaggtgcaaggaaaactcttatagtattcactagcggcaaggctgatgcgagcttaaat
gaagtaagggacagcgcgaagtctcttcaagatgctggcataaagattgtgtctgttgct
attggtgacagtgctgacgtaagtcagttgaaagagatctctacaaatgaagaagtagtt
aagtgtgaattgactggagatagtgacgctataattcacagggtttctcatgatgttgtg
agcgctgagcttagcggtgagacagtggacattgtatttgctcttggttcggctggctct
gatgctcacatggtgtttgagaaagagaaggaaatggtcgcaacttttgttaactcactc
gacacggcaaatcttcgttatgctctcgttaattatggtgaagatgccacacttcaggca
aactttaacgatcacaaggagaaatatgatttcaaggaatttcttgatacacttgcatgg
cccggtcacggtgtaggccttgcaaacgccttggaaaagtcggctgctgttttcaaggac
agcggtcgtgtcaatgcgaagcgtgtgcttgtactcttcaccaacgcacagtccaatgcg
cgcgcacaagatttgcagaaatactcacgtgatcttcaagagacggcggtgaaggttatc
gtcgttgccattggcgatgacgtgaacgaggaagagttgagtcagttgaatgggcaacct
atggttcgtcaccaggttcacgaggatttgaacgtgattgcaaagacactggcgtgtgat
atgttgagcaacgaagccgacgctgtacaaactccagtcctttctcctattcctaaagta
aaactggacgttgtgttcgccattggtgccgcaggaaaagacgccaacgacgtttttgag
aaagaaaagttgatagtgaactcattcatcgataacttgaaagataacgatgcccaattc
gccatcatcgaatttgggaataaagcaagtgtgaaatcaaacctcggggacgaaatgaat
gctgggatattggctgcgtccgtcgcagatctgcagagaagcggagaaggaaaatgcttg
gataaggcgcttgagcaagctgttgaggtcttccaccaaaaagcacgtgccggctctaac
cgcgtccttattgtcttgacgaacgccaaatccagtgctagaacccaggacttaaagaaa
cattcgcaaagcttgactgatgccggagtcaaagtccaagtggttgctattggcaacgat
attaacgaagatgagctggttcaaataacgagtaacgaaattcctctgctgagaattcaa
ccgtacgaggatcctcacaccgtgttaaaggagactgcatggattattggggaaaagcaa
gatgaatacctcgacattgtcttcgcatttggatcctttggagaagcagcaaaagaaata
ttttacaaagaaaaacaacttatttcatcatttattgactccgttcaaaaacccgacacg
aggtatggcgttatagagataggaccacgtgccaaggtttgtgctatgattggccaatat
cgtgatcacgtgcgtctcaaacgtcacgtgaatctggtgcgtcgtactggggatgcaaca
ggtctcgatcacgcgctagatgtcgcggccggcatgtttgaaaatcaggctcgtcccaac
tcccgccgcgtcttggtcgtgtttacaaacgggaagtctggggccaagagcgagcaagta
aagcagaactccgaaaggttgatcaaagcaaatgtagatatcatagtggttgctattggt
gatgacattgacgacgaagaatgtcaaaatgtctcgtgtggtaatcgtccaatcgtgtgc
attgatcccgaacagaatcctcgagcttttgtttattctattgtcaaagagatagaggaa
gtgaaatgtgtgaaacccactgatattgtttttgttattggtgctgctgggaatggagct
gaaaacatctacaataaaaacaaagagatcataagcaaatacattgaagcaaacaaggtt
ccaaatacaatgtacagtatagttgattacggtcccaaagctgttgttcgtagcaagttt
ggtgaaaataaacaacgcgccatattattggatcatattgagaaccttcaacatcctgga
gatgggaaagctttggataaggctttagagcaatctctgaatttgcttgaaaatgaaggt
cgatttggtgccaagaaaagggctgttttgtttacaaacggtaatagcggcgcgagcccc
ggtcacctcaagaaatactcgtctcttttggaggacgcaaatgtcaagattatcacggtt
gctgtgggtgatgacgtcaatgacagtgaaatacgtcatgtaaattcagatgaagaaact
attgtgaaagtggctgttgatgacgaaccagagtcagcggtctttgctgtagcaagacta
gttcaaggaccgaataaagtcaaatacgacattatcttcgcctttggtgccatgggagaa
tccgctgacatgattcatctgaaggaaaaagagatgattggctcttttatcgactcgttc
gcggccggagattatcgttatgccgtcgtggagtacggcagcaaggcttacgtgaaggcg
aaatttgacgaaatccgtggaaaggatgagatgaaagaatttgtgaagaatatcaaaaga
agtggagaaggtaaagctctggacaaggctcttgaacagtcgcatgacttgtttaaaaaa
tatggtcgtccaacagctaagaatgtccttattgtcttcaccaatggcaagtgcaacgcg
cgagccaatgaactgaagaaatacgccacgagtctttccgaacttggtacgaaattgatc
gtcgttgctattggggaagaggtcagcgtcgacgagttacttcatgttgcttcgaataaa
gaatccatcgtgagggcacaaccagaggatgattgtagccagttgtttaacagcattgta
cgcgacactattgaagaacgacccgtgactgacgtagatgttgtctttgctctcggaact
tccggtgaacatgcagacgaaatgtttgaaaaagagaaagagtttgtgaacggttttatc
gacgcgtccaattatggtgatacagattacgcttttattgagttctgcgatccgctaaag
cttcatttcagttttaaagatttcaacaacaacaaagatatcaaaaacaaaatttgctcg
ctttctcgacacggagatggtacgtcaatggccgaagctctacgaaaggcacacgaactt
ttcacgaacgacagtcgatcttcatcgcataaagttctcattgttatgacgaacggtcat
cttagtggtcgtgcgggagaattgagaaatggcgcaaaggctcttcagaagattggagtt
aaagttataacggttgccattggtgatgatgttgatcatgacgtaatacggcagctgtca
tgtgacgaaggcaatgttattcacgtgaaaaaagacgaggatgtgggatgtttggtctac
gtcattactcgtgaggctgtgaaaggaactcctgtttatgatgaggttgtgaaagaagaa
acatttttgcgtcaagtgtttttgcaaccaagagtcaatcttatacttaaaccaagtaca
tcaacgaccgagcaggctcagattgacgaggaagcgaagagactggaacgagaacaactc
gaggccgagaagagggccgaggaggagactttgaaattcgaggagatagaaagacaattg
gaggaaaaagaggaggaagcaagattggaaattgagagattagaaattgaagaattagaa
cgtaaacagaaagaaaatttgaaaggagaaaaagctcaaaggaaaaagaaagaagaagaa
gaggaagaattagcgatgatgcaatttgctgtagccacaccggagactgaaataatcaga
aaagcgcacgaaaggactttggatcttaacgaagcggtacctgaaagctag
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integrated database retrieval system
