Xenia sp. Carnegie-2017 (soft corals): 124442405
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Entry
124442405 CDS
T08024
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03022
Basal transcription factors
xen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124442405
09124 Replication and repair
03420 Nucleotide excision repair
124442405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xen03021
]
124442405
03036 Chromosome and associated proteins [BR:
xen03036
]
124442405
03400 DNA repair and recombination proteins [BR:
xen03400
]
124442405
Enzymes [BR:
xen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124442405
Transcription machinery [BR:
xen03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124442405
Chromosome and associated proteins [BR:
xen03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124442405
DNA repair and recombination proteins [BR:
xen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124442405
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
nSTAND3
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
124442405
NCBI-ProteinID:
XP_046848857
LinkDB
All DBs
Position
Unknown
AA seq
761 aa
AA seq
DB search
MKINIDGLLVYFPYDYIYPEQYSYMYELKRSLDAKGHCLLEMPSGTGKTISLLSLIVAYL
MHKPLELTKLIYCSRTVPEMEKVLEELKVLLEYYERESGKKPKILGVGLSSRKNLCIHPE
VNIDRDGKKVDGKCQTLTASYIRARHKHDSRVPVCSFYEEFEDCGREQQLAPGVYNLSDL
QDVGREKGWCPYFLARYSIYYANVIVYSYHYLLDPKIADLVSKGLPRSAVVVFDEAHNID
NVCIESMSVTITRRALERAHNNVESLAKTINDLKISDTARLREEYNQLVEGLREANVARE
TDQILANPVLPDDVLQEAIPGNIRQAEHYVGFMRRLIEYLKTRLRIHHVVSETPLSFLQH
IYQQVCIERKPLRFCSERLRSLLYTLELPDIADYGPLRLIASFATLVSTYSKGFILIIEP
FDDRTPTIPNPILHLSCMDASIAVKPVFDRFQSVVITSGTLSPVDMYPKMLDFNPVTMAT
FTMTLSRTCVCPLIVSRGNDQVVISSKYETREDMAVIRNYGILLAEFSSAVPDGVVCFFP
SYHYMETVVSAWNDQGIIGNIQKNKLLFIETQDSAETSLALHNYQMACENGXGAILLSVA
RGKVSEGIDFDHHLGRAVIMFGIPYVYTQSRILKARLEYLRDQFNIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGIMVFADKRFAKMDKRGKLPKWIQEYVKDSACNLTIDEAVQVSKHF
LRQMAQPFHREDQLGLSLLTLEQVQSQDFQKKIQQAAMEVS
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgaagataaatattgatggtttgttggtgtatttcccttatgactatatctacccagag
caatattcttacatgtatgaattaaaacgttcattggatgcaaagggtcattgtttattg
gaaatgccttctggaacaggaaaaactatatctcttttatctttaattgttgcatacctt
atgcacaaaccattggaactcacgaaattgatctattgttcgcgaaccgtgcctgaaatg
gaaaaggttctggaagaactaaaagttttgctggaatattatgaaagagaaagtggaaag
aaacccaaaattttaggtgtcggtttaagttccagaaagaatttgtgcatacatcctgag
gtgaacattgatagagatggtaaaaaagtcgatggaaaatgtcaaacacttacagcttca
tatatcagagcaagacataaacatgatagcagagttcctgtttgttctttttacgaggag
tttgaggactgtggccgggaacagcaactggctcctggtgtttacaatctttctgatcta
caagatgttgggcgagagaaaggatggtgcccgtactttcttgcaagatactccatctat
tatgccaatgtgattgtatacagttatcattatttacttgatcctaaaattgctgatttg
gtgtcaaaaggactgcccaggtcggctgttgtggtatttgacgaagcccataatatagat
aatgtttgtattgagtcaatgagtgtaactattacccgacgtgctctcgaacgagcgcac
aataatgtggaatctcttgcaaagactataaacgacttgaaaatctcagatactgcaaga
ttgcgggaagaatacaatcaacttgttgaaggtttacgcgaagcaaacgtggcacgagaa
acagaccaaatattggccaatccagttcttccggatgacgtcttgcaagaggcaataccg
ggaaacattcgtcaagctgaacattatgttgggtttatgaggagactcattgaatacctg
aagaccagattacgtattcatcatgttgtgtctgaaacacctctttccttcctgcaacat
atttatcaacaagtttgtatagaaagaaaaccattgagattttgttcagaaagattgcgt
tccctcctctacacgcttgaacttcccgatatcgcagactatggacctttacgacttatt
gctagttttgcgacccttgtcagtacgtattcgaaagggtttattttgatcattgaacca
tttgatgatcgtactccaaccatacctaatccaatattacatttaagttgcatggatgct
tcaattgctgttaaaccagtttttgaccgatttcaatcagtggtgatcacatcgggtacg
ctgtcaccggtcgatatgtatccaaagatgctggacttcaaccctgttactatggcgacc
tttacaatgactctgagcagaacttgtgtttgccctctgattgtgagccgtggcaatgac
caagttgttatctcttcaaaatatgaaacaagagaagatatggctgtgatacgaaactac
ggcattttacttgcagaattttcatctgcagttcccgatggagtggtttgtttctttcct
agttatcattacatggaaactgttgtatccgcttggaatgatcagggaattattggaaat
atccaaaagaacaaattattgtttattgaaactcaagattctgcggaaactagtcttgct
ttacacaattatcaaatggcatgtgaaaatggancgggagctattttgttatctgttgct
cgtggtaaagtttccgaaggaattgattttgatcatcatcttggccgtgccgttataatg
tttggcattccatacgtgtacacacaaagcagaattctcaaggcaaggttggaatatttg
agagaccaatttaatattcgagaaaatgattttctcacatttgatgcaatgagacacgct
gctcagtgtgttggtcgtgctattcgtggcaaaactgactatggaattatggtgtttgct
gataagagatttgcaaagatggataaacggggtaaattacccaaatggattcaggaatat
gtgaaagattctgcatgtaacctgactatcgacgaagctgttcaggtttccaagcatttc
ctgcgtcaaatggcccaaccttttcacagggaagaccagcttggcctgtcgttgttgacg
ttggaacaggttcaatcgcaggattttcagaaaaagatccagcaagctgctatggaggtt
tcttaa
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integrated database retrieval system
