Xenia sp. Carnegie-2017 (soft corals): 124443868
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Entry
124443868 CDS
T08024
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 B-like
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen04120
Ubiquitin mediated proteolysis
xen04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124443868
04120 Ubiquitin mediated proteolysis
124443868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xen04121
]
124443868
Enzymes [BR:
xen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124443868
Ubiquitin system [BR:
xen04121
]
Ubiquitin ligases (E3)
U-box type E3
124443868
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ufd2P_core
U-box
CENP-W
Motif
Other DBs
NCBI-GeneID:
124443868
NCBI-ProteinID:
XP_046850368
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
MSELTAEEIRQRRLARLSMSPQSTSQAPSTSTAHTSPSPSVDIPSYGTSPSTGFLMDVSP
SRNISIINKKGGGSLSSLDSGFDSQSMNVDDHMNEGMLSDKCGKRLPRNAPSTSPDLLQA
VKKSRENFEGPPVVDELLINAITQIFDVSFEEQQTKFAKSTCTFLPEMAENLRKKSLKAM
LADVEVFISDVLMERMLIEKYGNHSESMSCDMDDFTSKEEKEDHVEKIFIYLMESYGRVG
KIDKEYVQPKDKERYFDMLNEAKTLSLRYIYIALLERSILAPSPLMRFLLEDKAKQPSGF
LAELVTTLADDSAALESVFAPVLLGLAERIKNCSLADKSYKYPLEAMAQLCEIRKESPSN
RPICDLMVKLPSWLPSSFSDASGRELQRLSLLGPFFSLSVFAEDSEEIAKKYFYKTKLRR
DAIALSTNQLRHSLHEVQGQLFKIIHGLLVSVSSREKTLQFIAQVLDRNQKRSHMQTDDT
KHSTNGFMINFLSVLQTLCHKVTLDKINHYYLHHPKCRIDISQHTRMNGTLDEIKKWRDE
LGSKMKLDVVKFPTECYFLCFQCHHLSVMPCLHQYSKTWRTLRDMTKMIEELEGRESEWK
DTPMAARNKLLLKKWKERINKLMDSKVCSDVVLLDSDFLLNCLRYYSSTAEWIVMLMRNF
EHSPLELPLKTEVPKLFAALPEYFIEDIADFLTFINVHGTENVEDASLRNIVMLMIMVIC
TPSYLSNPYLTAKLIEVIFIGILVNQPQPCPWVEMLQYDVVCQDVLAPALMMFYTNVEST
GSSNEFYDKFSIRHHISVILKELWKMLHHKNAILKHSSSKDFIRFVNMLINDTTFLLDES
LNCLKSINEVQQLMKNRSEWEALSRESRTAHQRQLASNERQCKSYLTFANETVEMMHYLT
KDATEPFLKEELRDRLAAMLNYNLTQLCGPKCRNLKVEDPTKYHFDPKMLLDRITDIYLH
LDCAEFIEALAADERSYKNELFVLATKYLRKANLKTEAELSRFLMMSENVEKKKKENAQK
DEDFGDAPDEFMDPLMNTLMTEPVLLPTSGNIMDRAVIXRHLLNSSTDPFNRSPLSIEQL
VPVGELKEQIQKWIETKSRSRNDRSEL
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagttgactgctgaagaaattcgacagcgccgtctcgcccgactgtcgatgagt
ccacagtctaccagtcaggctccctctacttctacagcccacactagtccatcaccatca
gttgatatcccttcttatggtaccagtccaagtacaggtttcttaatggatgtttctcca
tcaagaaatatttccatcataaacaagaaaggcggaggctctctaagttctcttgatagt
ggttttgactcgcagtcgatgaatgtggatgatcatatgaacgagggaatgcttagtgat
aaatgtggtaaaagattgccacgcaatgctccttcgacatcaccagatttgttgcaagct
gttaaaaagagtcgagagaattttgagggaccacctgttgtagacgagctattgatcaat
gccattacacaaatatttgatgtatctttcgaggaacagcaaactaagtttgctaaaagt
acgtgtacatttcttcctgaaatggctgagaatttgcgtaagaaatctttgaaagcaatg
ttggcggatgtcgaagtatttatcagtgatgttttgatggaaagaatgttaatcgagaag
tatggtaatcatagtgaaagcatgtcttgtgatatggacgatttcacgtcgaaagaagaa
aaggaagaccatgtcgaaaagatttttatttatttgatggaatcttacggcagagttggc
aagattgataaagaatacgttcagccaaaagacaaggaaagatattttgatatgttgaat
gaagccaaaactttatcattgagatatatctacattgctctgttggaaagatctatactg
gctcccagtcctctgatgcgtttcttgctcgaggacaaggcgaaacaaccctcgggtttt
cttgccgaactcgttacgacattagccgacgatagtgcagctctggaatcagtgtttgcc
cctgtacttctgggtcttgccgaaagaataaaaaattgttcattggctgataaatcttac
aaatatccattagaagcgatggctcaactctgtgaaatacgtaaggagtctccatcaaac
agaccgatttgtgatctgatggttaaacttccttcgtggctgccatcgtcattttctgat
gccagtggtagagaacttcaaagactttctcttctcgggccgttctttagtctctcagtt
tttgctgaagactcggaagaaatagctaaaaaatatttttacaaaacgaagctgagaagg
gatgcaatagctctgagtaccaatcaactaagacattcacttcatgaagttcaaggacaa
ctctttaaaattatccatggtcttctggtatctgtttcgagccgtgaaaaaacattgcaa
tttatcgcccaagttttagacagaaatcaaaaacgctctcatatgcagactgatgacacc
aaacactccaccaatggatttatgataaattttctctctgttttgcaaacactgtgtcac
aaggttaccttagataagatcaatcattactacctgcatcatccgaaatgtcgcatcgac
atttctcaacacacacgaatgaatggaactttggatgaaattaaaaaatggagagacgaa
ctcggttccaaaatgaagttggatgtagtgaaatttccaacagaatgctatttcttatgc
ttccaatgtcatcatttgtccgtcatgccttgtcttcatcagtactcgaagacgtggagg
acccttagggatatgacgaagatgatcgaagaacttgaaggacgtgaaagtgaatggaaa
gatacgccaatggcagcgagaaataaactgcttttaaaaaagtggaaagaaagaataaat
aaactgatggactctaaagtgtgctcagatgtcgtacttctcgattcggacttccttctt
aattgtctcagatactacagttccactgccgaatggattgtgatgttgatgagaaatttt
gaacacagccctttggagctgcctttgaaaacagaagttccgaaactgtttgcagccttg
cctgaatacttcattgaagatatcgctgattttcttacgtttataaacgtccatggtacg
gaaaatgttgaagatgcttcgctgagaaacattgttatgttaatgattatggttatctgt
acaccatcgtatttgtctaatccttatctaacggcaaagcttatagaggtgatatttatt
ggtatactggtgaatcagcctcaaccttgtccttgggtggaaatgttacaatatgacgtt
gtgtgtcaagatgtgctcgccccagctcttatgatgttctacacaaatgtcgaatcaacg
ggctcgtctaacgaattctacgacaagttcagtattcgtcatcacatctcggtgatcttg
aaggaattatggaaaatgcttcatcacaaaaacgccattttgaaacacagttcttcaaaa
gatttcatacggtttgtgaacatgttgataaacgatacgacattcctactggacgagtcg
ttgaattgtcttaagtccattaacgaagtacagcaactgatgaaaaaccgatctgaatgg
gaagccttgtccagggaatctcgaactgctcatcaacgtcaactcgcgagcaatgaacga
caatgtaaatcatatttgacttttgccaatgaaactgttgaaatgatgcattatctaact
aaagatgcaacagaaccttttctcaaagaggaactacgagatagattggctgcgatgctc
aattataatcttacccagctctgtggacctaaatgccgaaatttgaaggttgaggatccc
accaaatatcatttcgatccaaagatgctgctagatcgtatcactgacatttacctacat
ttggattgcgctgaattcattgaagctctagctgctgacgagcgctcctacaaaaatgaa
ttatttgtcctggcgactaaatatttgagaaaggccaacttaaaaactgaggcggagttg
agtagattcttaatgatgtcggaaaatgtagaaaagaaaaagaaggagaatgcccaaaaa
gacgaagattttggagatgcgcctgacgagtttatggatccattaatgaacacgttaatg
actgagccagtgcttcttccaaccagtggtaatatcatggacagagcggtgatcnnacgc
catttgctcaactcttctactgatcctttcaacagaagtcctttatcgattgagcaatta
gtaccagtgggcgaattaaaggaacaaatacaaaaatggattgaaacaaagtcacgatca
agaaatgatcgaagcgagttgtaa
DBGET
integrated database retrieval system
