Xenia sp. Carnegie-2017 (soft corals): 124444051
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Entry
124444051 CDS
T08024
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03008
Ribosome biogenesis in eukaryotes
xen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124444051
09123 Folding, sorting and degradation
03018 RNA degradation
124444051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124444051
03009 Ribosome biogenesis [BR:
xen03009
]
124444051
03016 Transfer RNA biogenesis [BR:
xen03016
]
124444051
03036 Chromosome and associated proteins [BR:
xen03036
]
124444051
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124444051
mRNA degradation factors
5'-3' decay
5' exonucleases
124444051
Ribosome biogenesis [BR:
xen03009
]
Eukaryotic type
Pre-60S particles
RNases
124444051
Transfer RNA biogenesis [BR:
xen03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
124444051
Chromosome and associated proteins [BR:
xen03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124444051
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
DND1_DSRM
dsrm
MSSS
Motif
Other DBs
NCBI-GeneID:
124444051
NCBI-ProteinID:
XP_046850574
LinkDB
All DBs
Position
Unknown
AA seq
1625 aa
AA seq
DB search
MGVPKFYRWLSERYPCLSQVVKDHQIPEFDNLYLDMNGIIHPCSHPNDDDPHFRITEEQI
FLNIFQYIEVLFRIIKPQKVFFMAVDGVAPRAKMNQQRGRRFRSAREAEASVKKAEQKGE
VLPMEARFDSNCITPGTEFMVRLHEQLKYFVNKKISTDPGWQGLQIYLSGHETPGEGEHK
IMDFIRFERSQPGYDPNTRHCLYGLDADLIMLGLTSHDPHFSLLREEIRFGKKEKRISNP
EDITFHLLHLSLLREYIDLEFVALKEISYGYDLEKIIDDWILMGFLVGNDFVPNLPNFHI
NHDALPYLWRVYKEVMVSSDGYLHDGGILNLQRFETYTRAIAKLDLETFEDNSADLKWLE
GKTSQNIEDDEESELSEVDGPVKLASVDMENMSLNCDTGKQQGKLLNYLEEKGELDDEDD
DGDFTKEHEKYKLRYYREKFNLSEDDSCQDIIRELCMKYVEAIQWILHYYFNGVSSWGWY
YPFHYAPYVSDIKDFQDHPLVFEMGKPFLPFEQLLAVLPAASKELLPEPFRNLMIMEQSP
IIEFYPVDFETDLNGKKQDWEAVVLIPFIDEKRLLEAMEPFYQRLKKSERERNCHTSCML
YTYDAGKTERYTSSLPGVFPDIECCRASCEFIPINKYRLSTEKIIKGLLRNVKMDIYFPG
FPTLKHLLHTGELKKAGVKVFQMHSRNESMVLKIDETDEPNLKEICDSLVGKPCYIGWPH
LVEAFVKSVSDGRKKYIIAKDLPENIMEVNLTESDASAWRRQVYSEKSEYLERKAIDIGV
THVLIEAYRIQGKKYVCESNGEVIPEKIWSDSVATCPLQVTVKNINVFDEVDARGLCTTV
AELFPVDTECFMMAIPHYGSLGKVIEVDSKTNRVRVQLNVVPEPDFISLIINKEDYAENY
IPAHIMAKRLGLTTLALAQITGKVLLSVGDEENSSKVDIGLNLKFSKQNKEVLGYARRSE
GNWSFSKKTERTISIYQEKFPMVFDVLRKNSLYNERLKVSDVFPDEKSTIFADVEKWLKT
LPSHKQKAVSCGSSTLDEPLIRQIEETVEKLKKERRSSKIVKVRVKPSVLYRPMKFFGKV
SPDPKADFQLFDRVVNVRTLGVAPFALKGTIVGIHKGKTESEPANYEVLFDEECMGGESL
RGSGAFENKLYVIPEWSLLNLSYGDRLEREKRGLPNPLVQAQHALQYSVDPKNGVPAEYK
RSRKGAYHQKTWQTSLWSTNRQSPSPSGIAQNNNEQSPRVSYNSLESHSSLQNHQFNSPV
NLEYQPLNSQTVKRNETKVVPSETMKEHLSAKGSERTTREMLQLNGSHNSNTPIHSPQTS
LFYPDNAFMTSYLPQATPVSLSTSTGMLFLICQQNNWPQPTYSCQPTYSHAYAQYVIAAV
CVAGRIFSGGPCVSIEEAMESAAYMALYSFSPETYSRQYNNMTSSPTSPMASTTNYNNFS
PSSYSCNNESTTSPMSHARTSMRKEFSSEKHIHEKQAASPHECWENVFPKNQVESFSKGS
NSASGSLKNYSGSNNPFIPFQVTLNTSQSTKSKNIVKRNEVFPSDQMRGKSLNEPIHDAG
SILPNAHLDEKEEKSLNISSNSDDEDMIQESSIVNSSKSEKDKKNICAINLKPKLLAPSF
FTSKK
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccaaaattttaccgttggttgagtgaacgatatccttgtcttagtcaagtt
gtaaaagatcatcagattcctgaatttgataacctatacttggacatgaatggtatcatt
catccttgctctcatcctaatgatgatgatccacactttcgaatcacggaggagcagatt
tttttaaatatttttcaatacatcgaggtattgtttaggataattaaaccgcaaaaagta
ttttttatggctgttgatggtgttgcaccaagagcaaagatgaaccaacaaagggggaga
agatttaggtcagcacgtgaagctgaagcatcagtaaagaaagctgagcaaaaaggtgaa
gtgctacctatggaagcaagatttgactcaaactgtatcaccccaggtacagagtttatg
gtaagactccatgaacaactgaagtattttgtaaataaaaaaattagtactgatcctggt
tggcaaggattgcaaatttatctttctggtcatgagacacctggtgaaggagaacataag
ataatggattttattagatttgaaagatcacagcctggatatgatccaaacacaaggcat
tgtttgtatggtcttgatgctgacttaataatgcttggtttgaccagtcatgatccacat
ttttctctgcttcgtgaagagattcgatttggaaagaaagagaaaaggataagcaatcct
gaagatattacatttcatctcttgcatttgtctcttttgagagagtatattgatttggaa
tttgtagctttaaaggaaatttcgtatggttatgatttagagaaaatcatcgatgattgg
atattgatgggttttcttgtgggaaatgattttgttcctaacctaccaaattttcacatc
aatcatgatgccttaccttatctgtggagagtatataaggaagtcatggtttcttctgat
ggttatcttcatgatggtggcattcttaatttgcagcggtttgaaacatacacaagggcc
attgccaagttagatcttgaaacctttgaagacaattctgctgatttaaaatggcttgaa
ggaaaaacgtcgcaaaacattgaagatgatgaggaatcagagctctctgaagttgatggc
ccagttaagttagcatctgtcgacatggaaaatatgtctctgaattgtgatacagggaag
caacagggaaaattgttgaattatcttgaagaaaaaggtgaactggatgacgaagatgat
gatggagattttactaaagagcatgaaaagtataagctacgttattatagagagaaattt
aacctttcagaggatgacagttgtcaagacattattcgagagttgtgtatgaaatatgtt
gaagccatccagtggatattgcattattattttaatggtgtctcatcctggggatggtac
tatccatttcattatgcaccatatgtatcagatataaaagattttcaagatcatcccctt
gtatttgaaatgggcaaaccctttctgccatttgagcaactgcttgcagtattacctgca
gcaagcaaggagttgttgcctgaaccatttcgaaatcttatgattatggaacagtcacca
atcattgaattttatcctgttgactttgaaacggatctcaatggtaaaaaacaagactgg
gaggctgttgttcttattccctttattgatgagaaaagattacttgaagcaatggagcct
ttttatcaacgattgaagaaaagtgaacgcgagcgtaattgccatacttcatgtatgttg
tatacttatgatgctggaaaaactgaacgttatacgtcttctctacctggagtgtttcct
gacatagaatgttgtcgggcaagttgtgaattcatacctatcaacaagtatcgcctgtca
actgagaaaataattaaaggtcttctacgaaatgtaaaaatggatatctactttcctgga
tttccaacattgaaacacctcttgcatactggtgaactgaagaaagctggtgtcaaagtt
ttccaaatgcacagtcgtaatgaaagtatggtgttgaagattgacgaaactgacgaacct
aatttgaaggagatttgtgactccttggtgggaaaaccatgttatattggatggccacat
cttgtcgaagcgtttgtgaaaagcgtcagtgatgggagaaaaaaatacatcattgcaaaa
gatttacctgaaaatattatggaagtaaatttaacagaaagcgatgcttctgcctggagg
agacaagtctatagtgaaaaatccgaatatcttgaaaggaaggcaattgatattggtgtc
acacacgttcttattgaagcttatcgaatacaggggaaaaaatatgtttgcgagagtaat
ggagaagttattccggaaaagatatggtctgattcggttgctacttgtccattgcaagtt
acagtaaagaatatcaatgtgtttgatgaggtcgatgctagaggtctgtgcactacagtt
gctgagctatttcctgtagatacggaatgtttcatgatggccattcctcattatggttct
ttaggaaaggttatcgaggttgactcgaagacgaatcgcgtcagagttcaacttaatgtt
gttcctgagccggactttatttcactcatcattaacaaggaagactacgctgaaaactac
atacccgcgcacattatggccaagagactgggactcacaacgcttgcacttgcgcagatc
acaggaaaagttctcctttctgttggtgatgaggaaaactcgagtaaagtcgatattggg
ttaaatttaaaattttccaagcagaataaagaggttttaggatatgctcgtagaagtgaa
ggaaattggagtttttccaaaaaaactgaacgaacgatttcaatttaccaagaaaaattc
ccaatggtttttgacgtcctgagaaaaaattccttgtacaatgaaagattgaaagtatct
gatgtgtttcctgatgaaaaatcaacaatttttgctgatgtggaaaagtggttgaaaact
ctccctagtcacaaacagaaggccgtgagctgtggtagttccactctggatgaacctctt
ataagacagattgaagaaactgtagaaaaactaaagaaagaaagaagaagcagcaaaatt
gtgaaagttcgcgtcaaaccttctgttctttatagaccaatgaaattttttggtaaagtg
tcgccagatcctaaggctgattttcaattgtttgatcgtgttgttaacgtacgcacattg
ggtgtagcaccgtttgctcttaagggaactattgttggcattcataaaggtaaaacggaa
agcgaacctgcaaattatgaagttttatttgatgaagaatgcatgggtggagagtcatta
agaggttcaggtgcatttgaaaataaactttatgtgataccagaatggtctcttctaaac
ctttcctatggtgatcgtcttgaacgggaaaagagaggtttaccaaaccctcttgttcag
gcacaacatgcacttcaatactcggtcgatccgaaaaatggcgttccagctgaatataaa
cgaagcagaaaaggtgcttaccatcagaaaacttggcaaacgtcattgtggagtaccaat
cgccagagtccaagtccaagtggtatagcacagaataacaacgagcagagtccccgtgta
agttataatagtctggagtctcattcctcactccagaatcatcaatttaacagcccagtg
aatttggaatatcaaccattaaattcgcaaactgttaaacggaatgaaactaaagtagtt
ccaagtgagacaatgaaagaacatctttcagctaagggaagtgaacgcacgactcgtgaa
atgttgcaacttaatggatctcataattcaaatactcctattcattcacctcaaacgtcg
ttattttatccagataatgctttcatgacgtcatatcttcctcaggctacaccagtttca
cttagcacttcaacaggtatgttgtttcttatttgccagcaaaacaactggcctcaacct
acgtatagttgtcaacctacgtatagtcatgcatatgctcagtatgttatagcagctgtc
tgtgtagcggggagaattttttctggaggaccttgtgtttctattgaagaagccatggaa
agtgctgcttatatggccctatattctttttcccctgaaacatattcgaggcaatataac
aacatgacgtcatctcctactagtcccatggcatctactactaattacaacaatttctca
ccttcctcttattcatgcaataacgagtctacaacttctcccatgagtcatgcaaggact
tctatgcgaaaggaattctcttccgaaaaacatatccatgagaaacaagctgcatcgcca
catgaatgttgggaaaatgttttccccaagaatcaagttgaatcatttagtaaaggatcg
aattccgcgagtggaagtttgaagaattacagtggaagtaataatccattcattcctttc
caggtgacattgaacacatcacaatcgacaaaatcaaaaaacattgtgaaaagaaacgaa
gtatttcctagcgatcaaatgagagggaaatcattaaacgaaccaattcatgatgcagga
tctatattaccaaatgcccatcttgatgaaaaggaagaaaaaagtttaaatatttcgtct
aactcagatgatgaagacatgatacaagaatcctcgatagttaattcatcgaaaagtgaa
aaagataagaaaaatatctgtgctataaaccttaaaccaaagttacttgctccaagcttt
tttacctcgaagaaatga
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integrated database retrieval system
