Xenia sp. Carnegie-2017 (soft corals): 124444953
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Entry
124444953 CDS
T08024
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03020
RNA polymerase
xen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124444953
09124 Replication and repair
03420 Nucleotide excision repair
124444953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xen03021
]
124444953
03400 DNA repair and recombination proteins [BR:
xen03400
]
124444953
Enzymes [BR:
xen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124444953
Transcription machinery [BR:
xen03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124444953
DNA repair and recombination proteins [BR:
xen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124444953
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
124444953
NCBI-ProteinID:
XP_046851616
LinkDB
All DBs
Position
Unknown
AA seq
1179 aa
AA seq
DB search
MYDPDDDVAYGDDEGEEITPDLWQEACWIVISSYFEEKGLVRQQLDSFDEFIQMSVQRIV
EDSPEIELQAESQHMSADTEEPPKYTLKFEQIYLSKPTHWEKDGAPTAMMPNEARLRNLT
YSAPLYVDITKTTHKEGQQPIVQENGKTFIGKIPIMLRSTYCLLSNLTDRDLTELNECPL
DPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYSYTAEIRSCIEHSSRPTSTMWVSM
LARGSQGGKKSNIGQRIIATLPYIKQEIPVMIVFRALGFVADRDILEHIIYDFEDQEMME
LVKPSLDEAFVVQEQNVALNFIGTRGAKPGVTKERRVKYAREILQKEMLPHVGVSDFCET
KKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLYA
QKFIDKSKDFNLELAIKTKTITDGLKYSLATGNWGDQKKAHQSRAGVSQVLNRLTFASTL
SHLRRLNSPIGREGKLARPRQLHNTHWGMICPAETPEGHAVGLVKNLALMAYISVGSQPS
PILEFLEEWTMENLEEITPSAIHNSTKIFVNGCWVGIHRDPDQLMSTLRKLRRQMDIVVS
EVSMVRDFREKEIRIYTDAGRICRPLLIVENQKLLLKKQHIEMLKEREYNEYGWQDLVAN
GVVEYIDVNEEESVMVAMTPEDLIDKGVVYCSTYTHCEIHPSMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAI
VAIASYTGYNQEDSVIMNASGIDRGLYRSVFYRSYREQESKKGLESEELFERPSRDECQG
MRHAIYDKLDDDGLIAPGTRVSGDDVIIGKTMTLPENDDEFQSSNRRFTKKDASTFLRAS
ETGIVDQVLVTINQDGYKFTKVKVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCE
GITPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISQLLAEYG
YHLRGNEVLYNGFTGRKLNAQVFIGPTYYQRLKHMVDDKIHSRARGPLQILTRQPMEGRS
RDGGLRFGEMEXDCQISHGAAQFLNERLFECSDAYSCHVCDLCGLIAIANLRNNTYECRG
CKNKTQISRIRIPYAAKLLYQELMSMSISPRMMTVPPVK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatccggatgatgatgttgcttatggtgatgatgaaggtgaagaaataacacct
gatttgtggcaagaagcatgttggattgttataagttcgtactttgaagaaaaaggcctt
gttcgacaacagttggattcatttgatgagtttattcagatgtctgttcaaagaattgtt
gaagattcaccagagattgaactacaggcagaatcacagcacatgtccgcagatactgaa
gagccgcccaagtataccttgaaatttgagcaaatctacttgtcaaaacccacacactgg
gagaaagatggtgctccaacagccatgatgcctaatgaagcaaggcttcgcaatttgacc
tattctgctcctttgtatgttgacatcactaaaacaactcataaagaaggtcagcaacca
attgttcaagaaaatggaaagactttcattggaaaaattccaataatgcttcgttctaca
tattgtttacttagtaatttaactgatcgtgatttaactgaacttaatgaatgtccactt
gaccctggaggatactttatcattaatggctcagagaaagtcttaattgctcaagaaaag
atggcaactaacactgtatatgtttttgcaaaaaaagactctaaatattcatacactgca
gagattcgttcatgtatagagcattcttcacggccaaccagcacaatgtgggtgtcaatg
ttggctcgtggaagtcaaggtggtaagaaaagcaacatagggcaacgaattattgccact
ttaccatacatcaaacaagaaatacctgtaatgattgtttttcgtgctcttggttttgtt
gctgatcgtgacattttggagcatataatttatgactttgaagatcaagaaatgatggaa
ttggttaaaccatcattagacgaagcatttgttgtccaagagcaaaatgttgcgttgaat
tttattggtacacgtggagcaaaacctggtgttactaaggaaagacgtgttaaatatgcc
agggaaattcttcaaaaggaaatgttacctcatgttggtgtcagtgatttttgtgaaaca
aagaaggcctatttcttgggatatatggtgcatcgtttacttttggcttctcttggaaga
cgagaactggatgatcgtgatcattatggcaacaaaagactggatcttgctggacctctt
cttgcttttctttttcggggtttattccgcaatttgatgaaggaagtacgactatatgcc
caaaagtttatcgacaagagcaaagatttcaatttggagcttgcgattaaaacgaagacg
attaccgacggtttaaaatactccctagctactggaaactggggagaccaaaagaaagca
catcaaagtagagctggtgtttctcaggttttaaatagacttacatttgcatcgacttta
tcgcatttaagacgtctaaattctcctattggtcgagaaggaaaacttgccagaccacgt
cagttgcataatacacactggggaatgatttgtcctgctgagactcctgaaggtcatgct
gtgggtttggtaaagaatttagctctaatggcttatatctcggtgggatctcaaccaagt
cctatacttgaattcttagaagaatggacaatggagaatcttgaggaaatcacaccttca
gctattcataattcaacaaaaatttttgtcaatggatgttgggttggaattcaccgtgat
ccggatcaactaatgtctactttacgtaaattaaggagacagatggatattgttgtatcc
gaggtgtcgatggtgagagattttcgcgaaaaggaaatacgtatttataccgacgctggt
cgtatatgccgtcctttgttgattgttgaaaatcaaaaattgctgttgaagaagcaacac
attgaaatgcttaaagaaagagaatacaatgaatatggatggcaagatcttgttgctaat
ggcgttgttgaatacattgatgtcaacgaagaagaatcagttatggttgctatgacaccg
gaggatcttattgataaaggtgttgtgtattgttcaacatacacccattgtgaaattcat
ccttctatgatccttggtgtatgtgcttcaattattccatttccagatcacaaccagtcg
ccacgtaacacctatcagtctgctatgggtaagcaagccatgggagtgtacatcactaac
tttcatgtacgtatggatacattagcgcatgttctatattatccacaaaaacccctagtt
actacaaggtctatggagtatcttcgttttcgagagctaccagctggtatcaatgccatt
gttgctatcgcgtcttacacaggctataatcaggaagatagcgtgattatgaacgcatct
ggaatagatagaggactttaccgatctgttttttatcgctcttatcgtgaacaagagtca
aagaaaggcttagagtctgaggaactctttgaaagaccgtcaagagatgaatgtcaaggc
atgcgccatgcaatatacgataaactcgatgatgacgggctcatagctcccggcactcgt
gtgagtggtgatgatgtcattattggcaagacaatgacactacccgagaatgatgacgag
tttcaaagcagcaatcgacgatttacaaaaaaagatgccagtacatttttacgagctagt
gaaactggcatcgttgatcaagtattggtcaccattaaccaagatggttacaagttcacc
aaagttaaggttcgatctgtaagagtaccacagattggggataaatttgccagtcgtcat
ggacagaaaggtacatgtgggatcacatacagacaagaggacatgccttttacatgtgaa
ggaataaccccagatgttattataaatcctcatgcaatacctagccgtatgaccatcggt
catttaattgaatgtcttcaaggaaaggtttctgcgaacaagggtgagatcggagatgcc
actccatttaatgacgctgtgaacgtgcaaaagatctctcaattattagcagaatatggc
tatcatcttcgtggaaacgaggtgttatacaatggttttactggacgtaagcttaatgct
caagtattcattggtcctacatattaccaacgtttgaaacatatggttgatgataagatt
cattcacgcgctcgaggtcctttacagattttaacaagacaacctatggaaggaagatca
cgtgatggtggtcttcgttttggtgaaatggaancggattgtcaaatatcccatggtgca
gctcagtttcttaacgaacgtttatttgaatgctctgacgcgtacagttgtcatgtgtgt
gatctttgtggattaatcgcgattgcgaatcttcggaacaacacgtacgaatgtcgtgga
tgtaagaacaagactcagatttcccgcatccgtatcccgtatgcagcaaagttactgtac
caagaactaatgtcaatgtcaatttcaccgcgaatgatgaccgttcctccagtaaaatag
DBGET
integrated database retrieval system
