Xenia sp. Carnegie-2017 (soft corals): 124445796
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Entry
124445796 CDS
T08024
Name
(RefSeq) replication factor C subunit 4-like
KO
K10755
replication factor C subunit 2/4
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03030
DNA replication
xen03410
Base excision repair
xen03420
Nucleotide excision repair
xen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124445796
03410 Base excision repair
124445796
03420 Nucleotide excision repair
124445796
03430 Mismatch repair
124445796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xen03032
]
124445796
03036 Chromosome and associated proteins [BR:
xen03036
]
124445796
03400 DNA repair and recombination proteins [BR:
xen03400
]
124445796
DNA replication proteins [BR:
xen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124445796
DNA Replication Termination Factors
ELG1-RFC complex
124445796
Chromosome and associated proteins [BR:
xen03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
124445796
DNA repair and recombination proteins [BR:
xen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124445796
Check point factors
HRAD17(Rad24)-RFC complex
124445796
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_11
Rad17
AAA_22
Mg_chelatase
AAA_assoc_2
AAA_16
AAA_14
RuvB_N
ATPase_2
AAA_24
SLFN-g3_helicase
DUF815
AAA_5
AAA_19
AAA_30
ResIII
Viral_helicase1
AAA_28
Gp44_lid
AAA_7
AAA_23
Cdc6_lid
AAA_3
bpMoxR
TniB
AAA_2
RNA_helicase
DNAX_ATPase_lid
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
124445796
NCBI-ProteinID:
XP_046852527
LinkDB
All DBs
Position
Unknown
AA seq
355 aa
AA seq
DB search
MDVFLKGATSAKSKAKSKIDKEPRAIPWVEKYRPKSVDEVAYQDEVVNVLKRTLELNQAA
ELPNLLFYGPPGTGKTSTILAIARQLYGPELMKDRVLELNASDERGIEVVRNKVKKFSQR
AISTAPSGKKCPPFKIVILDEADSMTRNAQAALRRTMEKQNKTTRFCLICNYVSRIIEPL
TSRCSKFRFKPLHEDILLKRLKEICVKESVLYETGVIEKLVKVSDGDMRKAITYLQSASR
LKGSEEITKQDIVEISGIVPDKVIDDIFHSASSNSFEKLDLSVKNLMLEGYPGSQIISQI
YDRIVGMDDLTDKKKSVITERLGIVDKCLIDGADEYLQLLDLCSTIMTQICQAEN
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgtttttaaaaggggctacgtcggcaaaatctaaagcgaaatctaagatagat
aaagagcccagagcaattccgtgggttgaaaaatatcgtccaaagtcagttgatgaagtg
gcttaccaagatgaggtcgtaaatgttttaaaaaggaccctcgaactaaatcaagcagct
gaactacctaaccttcttttttatggcccccctggcactggaaaaacatcaactattttg
gctattgcacgacaattatatgggcctgaactaatgaaagatagagtattagagctaaat
gcttctgatgaaagaggaattgaggttgttcgtaacaaagttaagaaattttctcaaaga
gctatttctactgcaccaagtgggaaaaaatgtccacccttcaaaatagtaatcctggat
gaagctgattcaatgactagaaatgctcaggctgcattacgtagaacaatggaaaaacaa
aacaaaacaacaagattctgtctaatttgtaactatgtcagcaggataattgagcctctc
acatcaagatgttcaaagttccgttttaagcctcttcatgaagacattttgttgaaacga
ttgaaagaaatttgtgtgaaagaaagtgttctttatgaaactggggtcatagaaaaactt
gtgaaggtgtcagatggtgatatgcgtaaggcgattacctacctacaaagtgcttctaga
ttaaaagggagcgaggaaatcacaaaacaagatattgttgaaatatcagggattgttccc
gacaaagtcattgacgatatttttcattcagcttcttcaaattcatttgaaaaattagac
ttgtctgtcaaaaatttaatgttagaaggttatcctgggtcacaaatcattagccagatt
tatgaccgcattgttgggatggatgatctgacagacaaaaagaaatctgtcataaccgaa
agactggggatcgttgacaaatgcctcattgatggagctgacgaatatttgcaactcctg
gatttgtgttcaactatcatgactcagatttgtcaagccgaaaattag
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