Xenia sp. Carnegie-2017 (soft corals): 124446654
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Entry
124446654 CDS
T08024
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124446654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xen03021
]
124446654
03019 Messenger RNA biogenesis [BR:
xen03019
]
124446654
Transcription machinery [BR:
xen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124446654
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124446654
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
NeA_P2
Motif
Other DBs
NCBI-GeneID:
124446654
NCBI-ProteinID:
XP_046853458
LinkDB
All DBs
Position
Unknown
AA seq
1157 aa
AA seq
DB search
MAEEVVCQEYASSLEDLSFNSKPLINVLTMLAEENVQQAEGIIKLIEKRIYEVDIDKKLP
ALYLMDSIVKNIGNQYITAVSPCIVALFTHVFEQADEKTRLAMFRLRNTWPNFFTAKILH
ELDCSVNKRDPGWPVIEPPPPSPSIHVNPRFLSKVEENVDSQTSCSSSDEAKIMDEFEKK
KNELGKLQGDEMRTQMMQLEELQMKYELIKKKQEKDRLNLLKQQKEKILKMRLQQEELVA
AQENVPVSKAEAASTSIKNKAVDVRIVKIKEDIDSQSTDDTEESQADTETDPSDKMDVDS
SSEGLIIIEKQPDKVGFDSEFVPLDEDNHDTTNEPVVVYNRDRPLGKNRYFKKDPKAKII
KSESDSDSDLVDVKDSGNDEKNFEDKKGIKRGAIGHRNYRRRKEDDRANEKPSQMDDRRK
PEQSRDRKQNTDDVPNSHSNLDDTKARDPLPGRHRRSEHSDLGNRMRGQGRRGNRHDAPD
DRPDGPDRRAEGRISRHGDRPGGDRFNDRSGRRPEDRFPGRRRPGFSVRGRMSQRDMDKR
FQGRTDEGDSIRGGRYDNRHEGWGRGRGQRRPFRGRGFSESVDGHPRDYDRPFERGFVEE
PPFKRSRPPSPPRPLFSAREISEIRERRESPKHAGHVHGPPDEFVEPWLHENLPHAPHEF
YDGPPEHLGPGPRHFPHPHLAPRNHQRLPDFPGGVEIPVQLNLDNESELMRNADYRLRNG
DLSQEQHRDLMEKLGQFYELQKWQRRHSTDMPIPPHSFHDRPPFMLPQPASHPSGIHAGM
PLPDSNTRAHESRRNNDRLQGGNDVLPHQDNMMTDGRSHTSLPDSMIPTANFKIGSELLK
SNQDNVPPSSLGMEKQAVDDLFKKLMDVGIIKKVNETGSLSPARVSTPPMVDSQILNTIT
IPEVQQEIPEIKLTLDHLRRRYDYITVELHRGTQCSSCGLRFREENNEKYRQHLDWHFRI
NRKEKEIVAAHRNWFITTDDWLVFESSEVTTFKARSTVFEEESDGESEKTEDLQEGSCPA
LIGDTETERQCDICMEKFDTFWDETSEDWHYRNATRVDGKTYHYLCYQDAKETNASDMDG
SDELDNTHDISHIDDSKPADSQKTDEESLQSNTISNDEKSSIVTLHTTLQATVESVVHAS
DGLGVNNANKDTIKTES
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagaagttgtatgccaggaatatgcatcttctttggaggatttatcatttaac
tcaaagccactaataaacgtgctgaccatgcttgcagaggaaaacgttcaacaggcagaa
gggattataaagcttattgaaaaacgtatatacgaggttgatattgacaagaaattgcct
gcactctacttaatggattctatcgtaaagaacattggaaatcaatatattactgccgtc
tctccttgtattgtcgccttgtttactcatgtttttgaacaggcggacgagaagacccgt
ttggcaatgttcagactgcgaaacacatggccaaatttcttcaccgcaaagatactacac
gaactggactgtagtgtgaacaaacgtgatcctggttggcctgtcattgaacccccgccg
ccaagtccttcaattcacgttaatccaagattcttatccaaggttgaggaaaatgtggac
agtcagacgagctgctcgtcatcagacgaggcgaaaattatggatgaatttgaaaagaag
aaaaatgaattagggaaattacaaggcgacgaaatgagaactcaaatgatgcaactggaa
gaactgcaaatgaagtatgaattgattaaaaagaaacaagaaaaagatcgactgaatctt
ctgaaacaacagaaagaaaaaatattgaaaatgagactgcagcaagaagagcttgtggct
gctcaggagaatgtgccggtttctaaagcggaagcagcgtcaacttctataaagaacaag
gctgttgatgtgagaattgtaaagattaaggaagacatagatagtcaatcgactgacgac
actgaagaaagccaagcagataccgagactgatcctagtgacaaaatggatgtggattct
tcctctgaaggcttgatcataattgagaaacaacctgataaagttggttttgattcggaa
ttcgttcccctcgatgaggataatcatgatactacgaacgagcctgtggttgtttataat
agagacaggcctttgggtaagaacagatactttaagaaggatccaaaagccaagatcatt
aaaagcgagagcgattcggactcggaccttgtagatgttaaggattcaggtaatgatgaa
aaaaacttcgaagataagaaaggcataaaacgtggtgctattggacatcgcaattacaga
cgaagaaaagaagatgatcgtgcaaatgaaaaaccgtcgcaaatggacgatcgtagaaaa
cctgaacaaagtcgtgacagaaagcaaaataccgatgatgtacctaatagccatagtaat
ttggatgatactaaagctcgtgacccacttccgggaagacatcgacggtctgagcattca
gatttgggcaaccgaatgcgtggacagggaagacgtggtaaccggcatgatgctccagat
gaccgtcctgacgggccagatcgacgcgctgagggacgcatttcacggcatggtgatcgt
cctggtggtgaccgttttaatgatcgttctggacgtcgaccagaggatcgctttcccggt
agaagacgtcctggtttttcagtaagaggtcgcatgagtcagagggacatggataaaaga
tttcaggggagaacggatgaaggtgatagcatccgtggtggacggtatgataatcgtcac
gaaggatggggaagaggccgtgggcaaagaagaccgttcagaggacgcgggtttagtgag
tctgttgatggacacccccgagattacgaccgtccatttgagcgagggtttgttgaagag
cctccattcaaaaggtcccgtccaccctccccacccagacctttgtttagtgcaagggaa
atatccgaaatccgggagcgtcgtgaatccccaaaacacgcgggacatgtacacggcccc
cctgacgaatttgttgaaccatggctgcacgagaaccttccacacgcacctcatgaattc
tacgatggtcctcctgagcatcttggtcctggaccacgacattttcctcacccgcacctt
gcaccccgtaaccatcaacgattgcctgatttcccgggtggtgtcgaaataccagtacaa
cttaacttggataatgaatcggagctaatgaggaacgcggattatcgtttacgcaacgga
gatttaagccaagaacagcatcgagatttaatggagaaacttggtcaattttacgaactt
caaaaatggcagcgacgtcatagtacagacatgcctataccccctcactcttttcatgat
cgccctccctttatgctaccacaacctgcatcacacccgtcaggaattcatgcaggcatg
cctctacccgatagtaataccagagctcatgaatctcgtaggaataatgaccgtctgcaa
ggaggaaatgacgtattaccccatcaagataacatgatgacggatggaaggtctcataca
tcgttaccagactccatgatacctaccgccaacttcaaaattggatctgaattgttgaaa
tcaaatcaagataacgttccaccctcaagtttggggatggaaaagcaggcagtagatgac
ttatttaaaaaattgatggacgttggtatcattaaaaaggtgaacgaaactggatccctt
tctcctgctcgagtgtcgactccccccatggtagattcccagattttaaatacaatcacg
atcccggaagtgcagcaggaaatacccgaaataaagctgaccttggatcaccttcgcaga
cgttatgattacattactgtggaacttcatcgtggaacccaatgttcgtcatgtggttta
cgtttccgtgaagaaaataatgaaaaatatagacagcacttggactggcattttcgaatt
aacagaaaagaaaaagaaatcgtggctgctcatcgaaattggttcatcacgacggacgac
tggctggtgtttgagtcatcggaagtaacaactttcaaagctcgaagtactgtatttgaa
gaagaatccgatggagagtctgagaaaacggaagacttacaggaaggaagttgtcctgca
ttgattggtgatactgaaacggaaaggcaatgcgatatttgtatggaaaaattcgatacc
ttttgggatgaaacgtcagaagattggcattacagaaatgcaactagagttgatggcaag
acgtatcattatctttgttatcaagatgcaaaagagactaacgcgagtgatatggatggc
agcgacgagttggacaacactcatgacattagtcatatagatgatagcaagcctgcggat
tcacagaagactgatgaagaaagtttacaaagtaacaccatttctaacgatgaaaaatca
tcaatagttacgctccatactacactacaagcgactgtagaatctgtagtacatgcgagt
gatgggctaggggttaacaatgccaataaagacacgatcaaaacagagtcttaa
DBGET
integrated database retrieval system
