Xenia sp. Carnegie-2017 (soft corals): 124447264
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Entry
124447264 CDS
T08024
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124447264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124447264
03036 Chromosome and associated proteins [BR:
xen03036
]
124447264
Enzymes [BR:
xen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124447264
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124447264
mRNA degradation factors
5'-3' decay
Decapping complex
124447264
Chromosome and associated proteins [BR:
xen03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124447264
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
SNF2-rel_dom
Sirohm_synth_M
Motif
Other DBs
NCBI-GeneID:
124447264
NCBI-ProteinID:
XP_046854118
LinkDB
All DBs
Position
Unknown
AA seq
430 aa
AA seq
DB search
MATATTENMSNQTNIRDGGDGWKTKLNLPAKDRRVKTTDVTSTKGNDFEDYCLKRELLMG
IFEKGFEKPSPIQEESIPIALAGRDVLARAKNGTGKTAAYLIPVLEKVDVGKNVIQALIL
VPTRELALQTSQICKELGKHLTGLQVMVTTGGTSLKDDIMRLYNPVHVIIATPGRICDLI
KKELAKTKDCQMIVMDEADKLLSMDFKGVLEQIFEHMPSSKQILLFSATFPVTVKEFKEK
YLEKPYEINLMDELTLKGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSVQRVELL
ARRITDLGYSCFYIHSKMPQPHRNRVFHDFRKGECRNLVCSDLFTRGIDIQSVNVVINFD
FPKLSETYLHRIGRSGRYGHLGLAVNLITYEDRFDLFRIEQQLNTDIKAIPSTIDKSLYV
AEYQQVQDEN
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggctactgcgacgactgaaaatatgtcgaatcagacaaatataagagatggtggagat
gggtggaaaactaaactaaacttgccagctaaagatagacgggtgaaaactacagatgtg
acatcaacaaaaggaaatgattttgaagattactgcttaaaacgtgaattattaatgggt
atatttgagaaaggttttgagaaaccttcacctatacaagaagaaagtattcctattgct
ctggcaggtagagatgttttagcacgtgccaaaaatggaacaggaaaaacagctgcatac
ttgattccagtacttgaaaaagttgatgttggtaaaaatgtcattcaagcattgattttg
gtgccaacacgtgaacttgctttacaaacatcacagatttgtaaagaacttggcaaacat
ttaactggtttacaggtgatggtaacaactggtgggactagtttaaaagatgatattatg
aggctttacaatcctgtgcatgtgataattgcaacacctggaagaatatgtgatttaatc
aaaaaggagttggctaaaactaaagattgccaaatgattgtcatggatgaggcagataaa
cttttgtctatggatttcaaaggagttttggaacaaatatttgagcacatgccatcatct
aaacagattttattgttttctgccaccttccctgtcacagtcaaagaatttaaggaaaag
tatcttgagaaaccgtatgaaataaatttaatggatgagctaaccttaaagggtatcaca
cagtattatgcatttgttgaggaaaaacaaaaagttcactgcttgaacactttattttca
aagttacaaatcaatcaatccataattttctgcaattccgttcaaagagtagagttatta
gcaagacgcattacagatcttggatattcatgtttttatattcattccaaaatgcctcaa
cctcatcgcaaccgcgtatttcatgactttcgtaaaggagaatgtcgaaatttggtttgc
tcagatttgttcactcgtggcattgatattcaatcagtgaatgtcgtcatcaactttgat
ttccccaagctttcagaaacatatcttcatcgtattggtcgttccggtcgttatggtcat
cttggtttggcagttaatcttataacatatgaagatcggtttgatctctttagaattgaa
caacaacttaataccgacattaaagccattccatcaactattgacaagagtttatacgtc
gctgagtatcaacaagtccaagatgaaaactaa
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