Xenia sp. Carnegie-2017 (soft corals): 124447651
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Entry
124447651 CDS
T08024
Name
(RefSeq) helicase with zinc finger domain 2-like isoform X1
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124447651
Enzymes [BR:
xen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
124447651
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124447651
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124447651
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
RNB
AAA_11
AAA_19
AAA_30
ResIII
PhoH
SLFN-g3_helicase
AAA_22
DEAD
Viral_helicase1
AAA_16
nSTAND3
ATPase_2
zf-CCCH
UTP25_NTPase-like
zf-CCCH_4
UvrD-helicase
AAA_24
OB_Dis3
Mid2
Motif
Other DBs
NCBI-GeneID:
124447651
NCBI-ProteinID:
XP_046854574
LinkDB
All DBs
Position
Unknown
AA seq
2706 aa
AA seq
DB search
MGRYKLCRRFQHGYCFYGNKCTFAHGEGERTFWTELHNRQTKHLKKLREEQKLTESFSER
VMTMIKSKGEEHVLRDDLVGIAITCKSDWQLLLNRADKSAPSDHMFVIDVEIQKSSEFLL
TEVAFLHEFHLDRFKLLNNPGASSNPSSSQHSLRFSVGNNLIENSSKKTLATRFGVHFSS
EVFGVFEQKLIFDFGNGSVLSRKIKVSVVSKEILPNEEMLVKRCRIVDWSLDSVEVVKCD
DLLYLDEEGLCDSYPIPDVHPAPSEIPEFSSETYCESWHNILYTEEEYIKKEIARYDISN
GELKIVNCFTTFEVTRFAVNAEFFGEINLLDFLVVDEVSGHLISRSVYSVIVRPKDQALR
VYECCILFKSCHSVVIKLNKAFCEDYNVKYDQVINVDMKFIYNRRAMCEKHQAIDLCKEK
MDVLLPDFSAAPREYKQSIPHWFMDKKPNKNQHKAIAMILDPSPTPPIVVYGPFGTGKTF
TLSRACISILSQPSANKVLICTHSNSAADVHLDLLDKKIQSDSFSKLHPFRVLSQFITLT
KVEEHLRKYCNINEKTNEIRLPSSEELYSKNVIITTLSSAHILWKYCHNNSVAFTHILID
EAAQALEPECLVPIVMADRTTKIVLAGDHLQMGPPAYSKSLWPIDFGPQTSLLERLFAHY
NKCCIMGNNNNKESMEKTDKKNIEITKKSSVDNYGSNDDVTIPYVTLLTENYRCHANILR
FPSDNFYGGELVAKGDQFEHDTVPVLTFYTARGVDCWVEESLGYYNDAEVAELVTRIEEL
VLLSPKSWRKCIGVLTPYHDQVKRIRDCLRKRGLESVKVHRVENVQGMEFKALFISTVRT
QHTCKQIQDRNISSQLDFGFLSDAQLLNTAITRAKSLLSVVGDPMSLCSIGECRHLWKDY
LERCQENNGLFGCTMKDVMDYCLRSQTINPSAPSFIPTISSALDDKKEFDHHEGELDRDK
ADSPSLSRGIEGHDAMIVRELIKECKRTKEMDETKLQISPYDEDFPGISDGNSCNVDQTI
SKRKGHLKYKTADIQVGFYLEPGQERIQKTAGAVSTSGTNSLTQDEHDTNIFTTESLLSL
VESDKNRYKIFRIHVENRKGQRAYYGRLPTPDSPDIVLPGQVRGVFEDDVVVLELKAVTK
LHGINEYFGYIKGVLRRPIEIDRRYFVCKVDKDINVMIPRNKIIPKIVNYNESKEEGNIP
IYNVGTNGVTTVRSKLARKQLEEAKEGQRVIVVKICKWVQDYPYPLGHATDHIVSGEDIH
SGTKVLFREYNIKTKFKRDLLLSMARDFYEDGQIPRDQKSRPAYRDNVFTIDPPESKDLD
DAISVRVLSEGKYLIQVHIADVTYFVKPGTPLDAEARSRGTSYYPKNIEAAVPMLPPLLS
EKCCSLLLGEDRLSITVNLKIALDGGIIDEPLIERSIVRSSRKLTYLEAQHIIDRPDLPS
AVSGEQERQLTVDEAIKVANSIAQNCRLLRLGFESVFHQRSSDEFGSESNENEKEAHQLI
EEIMIMTNNHVAKYLLRKFPETTPLRVQPPPKHHREIEWRQRFQFLFDLSMQDEDLEPLK
ANETDVTEIRVPRRTWNKLIEKVKMRAGFKQIVKVLSDVDHFPHLALAAMRKRKIQQRGR
YVCSGENFDYIPYPWTAISSNERNSSSNASDTTSENEDENRKKLKTLLHGHSSLKLNSYC
QFTSPIRRYIDIVAHRLVIATLENETDVISVENLTQLCEHCTYVHQNSKKFERDSKKLKL
AIDIKSSSGKFVSAYVDNITIESFQLFFGKETLDSYSSNSISSSKLGLSIDPEEEENKIK
LQWKFRLIRFESKDRLQSKLRKYVSKNLRKKWNFQSEEVSTQAPEDDDFSLSLNDWKQIL
EAIKKNRLDKLNSVLLRVNKCFQDKGNARRSPQEDVLKTFVETSSSELTIATDQLIQVKQ
SLRSLDQITVQLCSNASRGLLIPEIQLFKITNIFYSCIEHRTLPATCFAKVPTHKPYNNK
RYDDIEQYVTLWKPVLMMEIVTSAVAENDVIILFNLHANISLINGKTILEFQLSNDFIKN
HFVGTLHLNLLCVRIRDPANINESNAGYWVGHFQILPPFRKNSESEDDMEWPDWEKCERK
VRQKSDKEFCTFTADFIHSALPIPQSLIDQGSSVVIAEMIKLSVPERRCYTALLMAPENK
SSLIHNICIEDSNAIYNVQKDELPQNLSFEEKEEKFPPLNEYQLKAVRDALNSSFTVIQG
PPGTGKTVVGVHIAYWFAHYNQLRFSAVKKKDDEGYKGAVVFYLGPSNKSVDVVAHYLLK
IPDFPILRIYGQEIERKTFPVADQLSAFRLKNSSAQLACDPKLKDVSLHHVIRSDTCPFS
KKIKEFDETFKRYISEGGFATRQEIASYEKEKAKAEKWAMTENNVKVILATCTIAYSRRV
MSPCEDLVSQCIIDESAMCIEAETLCGMLGSKPEQVVLIGDHKQLQPIIKCKQAKQLGLG
VSMFERYSKKANMLKLQYRMHKEICNFPSQRSYDGKLETAEIVKRRKPDQYKWPNGNSFP
FAFNHVEGHEESLIISTDKGNENSKKNEKEIKEVIRVASEIKDSGITEESILILSPYRAQ
CYELEKQLKNTGLNSVSVSTVVAAQGSESDYVILSLVRSLDESLIEKNPSKTWLDEHIGF
IMDENQVNVALTRAKKGLVIIGNANLIDACRTGVWSALLQHYKNKNCFIDRSKENQDENA
SNPSSY
NT seq
8121 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgatacaagctatgtcgaaggtttcaacatggctattgtttctatggaaataaa
tgtacctttgcacacggtgagggtgagcggacgttttggacggagttgcataatcgtcaa
actaagcatttgaaaaagctgagagaggaacaaaaacttaccgaaagctttagtgagaga
gttatgacgatgattaagagtaaaggggaagaacatgttcttagagatgatcttgttggt
atagcaatcacgtgtaagtcggattggcaactgctgcttaatagggctgataagtctgcg
ccaagtgatcacatgtttgtcattgatgtcgaaattcagaaaagctctgaatttttacta
acggaagtggcgtttttgcacgaatttcatcttgatcgattcaaattgcttaacaaccct
ggcgccagctctaacccctcttcaagtcaacacagtttacgtttttcagtcggcaacaac
ttaattgaaaactcatcgaagaaaacgctggctactcgttttggcgttcatttctcatct
gaggtctttggtgtttttgaacaaaagttgatctttgattttggaaatgggtctgtatta
tctaggaaaattaaagtgtccgttgtcagcaaggaaattcttccaaatgaagaaatgctg
gtgaaacgatgtcgtatagtggactggtctcttgacagcgttgaagtggttaagtgtgat
gatctgctttacctggatgaagagggtttgtgtgactcgtatccaattcctgatgtccat
ccagctccatcagaaatacctgaattcagttcagaaacatactgtgaaagttggcataat
attctttacactgaagaggaatatatcaaaaaagaaatcgccaggtatgatatttctaac
ggagaactaaagattgttaattgctttacaacattcgaggtaacaaggtttgctgtaaac
gccgagttttttggagagattaatttattggactttttggtggttgacgaagtttctggt
catctgatcagccgttcagtttattctgtaatagtccgaccgaaagatcaagccttacgt
gtgtacgagtgctgtatcctatttaaaagttgtcactctgttgtaatcaaattaaacaaa
gcgttttgtgaagattacaatgtgaagtatgaccaggttatcaatgttgatatgaagttt
atttacaaccgtcgtgcaatgtgtgaaaagcatcaagccattgatttatgtaaagaaaaa
atggatgtcttattaccagacttttcagctgcccctagagaatacaagcaatctattcct
cattggtttatggataaaaagccgaacaaaaaccagcacaaagcaattgctatgattctc
gatccaagtcctactccaccaattgtcgtctatggtccattcggcaccggaaagacattc
actcttagccgtgcttgcatatctattctcagccagccaagtgccaacaaagttttaatc
tgcactcattctaatagcgctgcagatgtgcatttggaccttttggacaagaaaatacaa
agcgattctttttcaaagctacatccatttcgtgttctcagtcagtttataactctaacg
aaagttgaagaacacttgcgcaaatattgcaacataaatgaaaagacaaatgaaattaga
ttaccaagctctgaagaattatattccaaaaatgttattataaccacgctgtcgagtgct
catatattatggaaatattgtcataataactcagttgcttttacacacattctgattgac
gaggctgcgcaagctttagaacctgaatgcttagtgccgattgttatggctgatcgaact
acaaagatcgtccttgctggcgatcacctacagatgggtcctcctgcttattcaaagtct
ttgtggccaatcgattttggccctcaaacgtcgcttctggagcgtctctttgctcattac
aataaatgttgtattatgggtaataataataataaagaaagcatggaaaaaactgacaaa
aagaacatcgaaattactaaaaagagcagtgttgataactacggcagtaacgacgacgtt
acaataccttacgtgacactacttacagaaaactatcgatgccatgcaaacattcttcgt
ttcccatcagataacttttatggtggggaactggttgctaaaggtgatcaatttgaacac
gatactgtccctgttctcacattttataccgcgagaggagtggattgttgggttgaagaa
agtttaggatactacaacgatgcagaggtggcagaattggtgacaagaatagaggagctt
gttttgctttcgcctaaaagttggcgaaaatgcattggcgtgctcactccttatcatgat
caggtgaaacgtattagagattgcttgagaaagagaggtcttgagtcagtaaaggtccat
agagttgaaaacgttcaaggcatggaattcaaagcgttatttattagtacagtcagaaca
caacatacctgcaagcaaatccaggatcgtaacatctcatctcaactagattttggattt
ctttctgatgcacagttattaaacacagcaattactcgagcaaagtctttgctgtctgtt
gtcggagatcctatgtcgctttgtagtataggagagtgtcgccatttgtggaaagattac
ctcgaacgttgccaagaaaacaatggtttgtttggatgcacaatgaaagatgtgatggac
tactgtctgcgatcacaaactattaatccaagcgctccttcgtttattccgacaatttca
agtgctttagatgacaaaaaagaatttgaccatcacgaaggagaattagatagggataaa
gcagattctccttctctatcacgtggtattgagggtcatgatgcaatgattgttcgagaa
ctaataaaagaatgcaaaagaacgaaggaaatggatgaaactaaattacagataagccca
tatgatgaggactttcctggcatatctgatggcaactcatgcaacgtagaccaaacgatt
tctaaacggaaaggtcacttgaaatataaaactgctgacatacaggtgggcttttacttg
gaaccgggtcaagaacgaattcaaaagactgctggcgctgtatcaacatcgggaaccaac
agtttgacacaggacgaacatgatacaaatattttcaccacagaatctttactttcattg
gttgaaagtgacaaaaatagatataagatatttaggatacacgttgagaacaggaagggt
caaagagcttactacgggcgactaccaacaccagatagtcctgacatcgtccttcctggc
caagtccgtggtgtttttgaagatgacgtggttgtgcttgaattaaaggctgttacaaaa
ttgcatggcataaacgaatattttggatacattaaaggagtactaagacgacccattgaa
atcgatcgtcgttattttgtttgcaaagtagataaagacatcaatgtcatgataccacga
aataaaatcataccgaaaattgtcaattataatgaatcaaaagaagaagggaacattcca
atttacaacgtaggaactaatggtgtcaccactgtaagatcaaaacttgccagaaaacag
ttggaagaagcaaaagagggtcaaagagttattgttgtaaaaatatgcaaatgggttcag
gattacccgtatcctctcggtcatgctactgaccatatcgtgtctggtgaagatatacac
agcggaacaaaagttctttttagagagtacaatataaaaactaagttcaaaagagatttg
ctgttaagtatggctcgagatttctacgaagatggacaaattcctcgtgatcaaaaatct
agacctgcttatcgtgataacgtatttaccattgaccccccagaatcaaaagatcttgat
gatgccataagtgtcagagtgctttctgaggggaaataccttattcaagttcatatcgct
gatgtgacatattttgtcaaacctggcacaccattagatgcggaagccagatcacgaggc
actagctactatccaaagaatatagaagcagcagtgcccatgctcccgccattgctttcc
gagaagtgctgcagtttattgcttggtgaagatcgtctgtccataactgttaatctgaaa
attgcacttgatggtggtattattgacgaaccacttatagagcggagtattgtaaggtca
tcaaggaaactcacttatctggaagcgcaacacataatcgatagacctgatttgcctagt
gctgtctccggtgaacaggaaaggcagttaacagttgacgaagcaatcaaagttgcaaat
tctattgctcaaaattgtcgtctgttacgtcttggctttgagtcagtttttcatcaaaga
agttcggacgaatttggtagtgaatcaaatgaaaacgaaaaggaagctcatcaattgatt
gaagaaatcatgataatgaccaataatcatgtggcaaagtatttgctgagaaaatttcca
gaaacgactccacttcgtgttcaaccacctcctaaacatcaccgagaaattgaatggaga
caacgttttcaatttttgtttgatctctcaatgcaagatgaggatttagagcctttaaaa
gctaacgaaacagatgtcacagaaattcgggtcccccgccgaacatggaataaattgata
gaaaaagtaaagatgcgtgcaggattcaagcaaatagtaaaggttctttctgatgtcgat
cactttcctcatctagcattggctgccatgcgcaaacgaaaaatacagcaaagaggaagg
tatgtttgttctggggagaattttgactacattccttatccatggacagcaatttcttca
aatgaaagaaattcatccagtaacgcttcggacacaacatctgagaatgaagacgaaaac
agaaaaaaattgaaaactctattacacggtcattcaagtctaaaactcaactcttactgt
cagttcacatcaccaattcgtcgatatatcgatattgttgctcatcgtcttgttatcgca
actttggagaatgaaactgacgttataagtgtagagaatcttacgcaactttgtgaacat
tgcacttacgtccatcaaaactcgaaaaaatttgaaagagattcaaaaaaactgaaattg
gccattgatataaagtcgagctcaggcaaatttgtttctgcgtatgttgataacatcact
atagaaagtttccagctgttttttgggaaagaaacacttgactcatattctagcaattct
atttcctcttcaaaacttggacttagtattgatcctgaagaagaagaaaataagataaaa
cttcagtggaaatttcgtttgataagatttgaaagcaaagatcgtttgcagtctaaactg
cgaaagtatgtgtcgaaaaatttgaggaaaaaatggaacttccaatcagaagaagtatca
acccaggcgcctgaggatgatgatttctctttatcgctgaacgattggaaacaaatactt
gaagcaataaagaaaaacagactggacaaactaaatagtgttttgctgcgagtgaataaa
tgctttcaagataagggcaatgctcgacgctctccccaagaagatgtattaaaaactttt
gttgaaacttcaagctccgagttgacgattgccacagatcagttgatacaagtcaaacaa
tctttaaggtcgctagatcaaatcacagttcaattatgctccaatgcatcgcgtggtctt
cttatacctgagattcaattgtttaagattacaaacatattttactcatgtattgaacat
cgaaccttaccagcaacctgttttgcgaaggttccgacacacaagccttacaacaataaa
cgttacgatgacatagaacaatatgttactttgtggaaacctgttctcatgatggaaatt
gtgacgtcggccgtagcagaaaatgacgtaatcatattatttaatcttcatgcaaacata
tcattgatcaatggcaaaaccattctagagtttcaattatcgaacgacttcatcaaaaat
cacttcgttggcacacttcatcttaacttactgtgtgtacgcataagagatccagctaac
attaacgaatcaaatgctggttattgggttggacattttcagatcctcccaccattcagg
aaaaattccgaatcggaagacgatatggagtggcctgattgggaaaaatgtgaaaggaaa
gtgagacaaaaaagtgacaaagaattctgtacatttacggctgactttatacacagcgct
ttgccaatcccacaatcgttgattgatcaaggcagttcagttgttattgccgaaatgata
aaattaagcgtacctgaaagacgctgctacacagcattgttgatggctccagagaataaa
tcatccctgattcacaatatttgtatcgaggactctaatgccatctataatgttcagaag
gatgaacttccccaaaatttgtctttcgaggaaaaagaggaaaaatttcctccactcaat
gagtatcagctcaaagcagtgagggatgctctgaattcttcatttactgtgattcaggga
ccaccaggtacaggaaaaacagttgttggcgtacatattgcatactggtttgcccactac
aatcagttacgattttcagctgttaaaaagaaagatgatgagggctataaaggcgctgtt
gtgttttatcttggaccttcaaacaagtcagttgatgtggttgcacattatttattgaaa
attcccgattttcccattttgcgaatctatggacaagaaattgagcgaaagacctttccc
gttgctgatcagttgtcagcctttcgattgaaaaattcgtctgctcaactagcgtgtgac
ccaaaacttaaagacgtttctctgcatcatgtaatacgcagcgacacatgtcctttttcc
aagaaaatcaaggagtttgatgagacatttaagagatatattagcgaaggtggttttgct
acacgacaggaaattgcaagttatgaaaaggaaaaagccaaggctgaaaagtgggccatg
acagaaaacaatgtcaaagtgatattagcgacatgtaccatagcgtacagtagacgtgtt
atgtctccgtgtgaggatttagtgagtcaatgcatcattgatgaaagcgctatgtgtatc
gaggcagagaccctttgcggtatgttaggctcaaaacccgagcaagtcgttctgattggt
gatcacaagcagcttcagccaattatcaaatgtaaacaggcgaaacaactgggtctcgga
gtttctatgtttgaacgatactcaaaaaaagccaatatgctgaaattacagtacagaatg
cataaagaaatttgtaactttccatctcaaagatcctacgacggaaaacttgagacagct
gaaattgtcaaacgccgtaaaccagaccaatacaaatggcctaatggcaactcctttcct
tttgcctttaatcatgttgaagggcacgaagaatcacttattattagcacagataaagga
aatgagaactcaaaaaagaatgaaaaggagataaaggaagttattcgtgttgcaagcgaa
attaaggattcaggtattactgaggaaagcatccttattctgtcaccctatcgtgctcaa
tgttatgaactggagaagcagctaaaaaatactggccttaacagtgtgtctgtgtcaaca
gttgttgccgcccaaggaagcgagagtgactacgttattctgtcattggtaaggtcactt
gacgaaagtttgattgaaaagaatccatcaaagacatggcttgatgaacatattggattc
ataatggatgaaaatcaagtaaacgttgctctcacacgagcaaagaaaggcctcgtgata
ataggaaatgcaaacttgatcgatgcctgtcgcacaggggtatggtctgccttattgcag
cactacaaaaacaagaactgctttattgatcgttcaaaagaaaatcaggatgagaatgca
tctaaccctagctcatattaa
DBGET
integrated database retrieval system
