KEGG T08024: 124449616

Xenia sp. Carnegie-2017 (soft corals): 124449616

Entry

124449616         CDS       T08024

Name

(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like

K14404

cleavage and polyadenylation specificity factor subunit 4

Organism

xen Xenia sp. Carnegie-2017 (soft corals)

Pathway

xen03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:xen00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    124449616
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xen03021]
    124449616
   03019 Messenger RNA biogenesis [BR:xen03019]
    124449616
Transcription machinery [BR:xen03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     124449616
Messenger RNA biogenesis [BR:xen03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     124449616

SSDB

Motif

Pfam:

zf-CCCH zf_CCCH_4 Torus zf-CCHC zf-CCCH_3 zf-CCCH_2 zf-CCCH_4 zf-CCCH_12 zf-CCHC_2 zf-CCCH_RBM22 zf-CCHC_3 Nab2-like_zf-CCCH_ zf-CCCH_11

Other DBs

NCBI-GeneID:

124449616

NCBI-ProteinID:

XP_046856509

LinkDB

Position

Unknown

AA seq 273 aa
MLSVVANVDDIVFDVEAALGQQLGTQPLPFPGMDKSGAAVCEFFLKNNCIRGSYCPFRHT
TGEKTIVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYTKFGECMNKECQYLHVDPESR
VRHCPWYDRGFCKHGPNCRHQHVRRVLCVNYLCGFCPEGKQCKYSHARFELPVMSEYQDY
GMKKIVCHRCFQPGHKISTCPLNVTVGVTPIPQNLPTPHTANVQIPIHTTMGAGQHVIRM
PWRPLETVTCFKCGEKGHYANKCTKSKADLLRA

NT seq 822 nt +upstreamnt +downstreamnt
atgttatcggttgtagctaacgtcgatgacatcgtgtttgatgttgaagctgccttgggt
caacaactaggcactcagcctttaccctttcctggcatggacaaatctggtgctgcagtt
tgtgagtttttcctgaagaacaactgcattcgaggcagctactgtccatttcgacatacc
acgggagagaaaaccatagtgtgcaaacattggttgagaggtctatgcaagaaaggggac
caatgtgaattcttacatgaatatgacatgtctaagatgcctgaatgttatttttatact
aagtttggtgaatgtatgaacaaagaatgtcaatatcttcatgttgatcctgagtcacgt
gtaagacattgcccttggtatgacagaggtttctgtaaacatggtccaaattgtcgccat
caacatgtcagaagagttttatgtgtcaactatctttgtgggttttgccctgaggggaag
cagtgcaaatatagtcatgctagatttgagctaccagtgatgtcggagtaccaagattat
ggcatgaagaagatagtctgccatcgatgttttcaacctggacacaaaatatctacatgt
cctcttaatgtcactgtgggagtaactccaattccacagaatcttcccacaccacatact
gccaatgttcagattcctattcacacaactatgggagctggacagcatgtgataaggatg
ccatggagaccacttgagactgtcacatgttttaagtgtggggagaaaggccactatgca
aacaagtgtacaaaatcaaaagcagatcttctgagagcatag

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