Xenia sp. Carnegie-2017 (soft corals): 124452251
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Entry
124452251 CDS
T08024
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03015
mRNA surveillance pathway
xen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124452251
09123 Folding, sorting and degradation
03018 RNA degradation
124452251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xen03019
]
124452251
03041 Spliceosome [BR:
xen03041
]
124452251
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124452251
mRNA cycle factors
Stress granule specific factors
124452251
Spliceosome [BR:
xen03041
]
Complex C
Other components
Complex C specific factors
124452251
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_Nup35
RBD_DEAH11
RRM_7
RRM_5
RRM_3
RRM_occluded
VirE3
DUF6262
Motif
Other DBs
NCBI-GeneID:
124452251
NCBI-ProteinID:
XP_046858793
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MNATAPNNYPMATLYVGDLAPDVNEAVLFDKFSATGPVVSIRVCRDLATRRSLGYAYVNF
QQSADAERALDTMNFEPIKGRPCRIMWCQRDPSLRRSGVGNIFIKNLDKGIDNKALYDTF
SAFGNILSCKIALDENEVSKGFGYVHFETQEAADEAIEKVNGMLLNDKKVFVGKWMSRKE
RIDQLGDAPRKFTNVYVKNFGEDFSDEDMKNLFEKFGEIQSMKVMRTEDGKSRGFGFVSY
AEPEHASKAVEEINDKEVNGRILYCGRAQKKSERQAELRRRFQQQKMERNIQFQGVNLYI
KNLEESIDDTRLRKEFESYGTITSAKVMRDEKGNSKGFGFVCFQSPEEATKAVTEKNGQI
VMTKPLYVALAQRKEERQAQLAAQHMQRVGRMIPQGTQPVGQMFTGGFYPAMAPFPTGQR
PAFLPAQVPRPRFSNQGVRGTPGYPGAMMTRPRMPRAPPRPINQQQSRIAPGGGANMAGL
SGQRAPSASGTRNQKYSLPLIKLV
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctacagctccgaataactatcccatggctacgctttatgttggagatttggct
cctgatgtcaacgaagccgttctcttcgacaaattcagtgcaaccggtcctgttgtgtcg
attcgtgtctgtcgtgatttggcaacgcgtcgctctttgggctatgcttatgtcaacttc
cagcaatcggcagatgccgaaagagcgttggataccatgaattttgaacctatcaaagga
cggccatgtcgtattatgtggtgtcagagagatccttctttgcgccgatctggtgttgga
aatatcttcataaaaaatttggataaagggatcgacaacaaggctctgtacgacactttt
agtgcttttggtaacatcctttcatgcaaaattgcgttggatgagaatgaagtttctaag
ggctttggttatgtccatttcgagacacaagaagcggctgatgaagctatcgagaaagtc
aacggcatgttgctgaatgacaagaaagtgtttgtcggtaaatggatgtctcgcaaggaa
cgtatagatcagctaggtgatgcgccaagaaaattcaccaatgtttatgtcaagaatttt
ggtgaggatttctcagatgaagacatgaagaatctttttgaaaagtttggtgagatccaa
agcatgaaagtgatgcgaactgaagatggcaaaagcagaggctttggctttgtcagttat
gcagaaccagaacatgctagtaaggctgttgaagaaataaatgataaagaggtgaatggt
aggatattatattgtggacgtgctcagaagaagtctgaaagacaggcagaattaaggcga
cgcttccagcaacagaagatggaaaggaatattcaatttcaaggggttaacttatacatt
aagaacctcgaggaatccattgatgatacacgtctgaggaaagaatttgaaagctatgga
acaattacaagtgcaaaagtgatgagagatgaaaaaggcaactccaaaggttttgggttt
gtttgcttccagtcacctgaggaagccacaaaggctgttacagaaaaaaatggtcagatt
gtgatgactaaaccactttatgttgctcttgcacaacgtaaagaagagcgtcaggcacag
ctagctgcccagcacatgcaacgtgttggtaggatgattcctcaagggactcaaccagtt
ggtcaaatgtttactggtggattttatcctgccatggcaccatttccaactggccaacga
ccagccttcctgcctgcccaagttcctcgtcctagattctctaatcaaggtgtgcgtggc
actccaggatatcctggtgcaatgatgactcgtcctcgaatgcctagagctccaccacgt
ccaattaaccaacagcagtcacgtattgctcccggtggtggtgccaacatggctggctta
agtggacagcgagctccatctgcatcaggcacacgcaaccaaaagtatagcctgccatta
atcaagctggtgtag
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