Xenia sp. Carnegie-2017 (soft corals): 124452490
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Entry
124452490 CDS
T08024
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124452490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xen03041
]
124452490
Spliceosome [BR:
xen03041
]
Complex B
Other components
Prp19-related factors
124452490
Complex C
124452490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
Nup35_RRM_2
zf-CCCH_2
zf-CCCH
zf-CCCH_4
RRM_occluded
zf-CCCH_PARP12
RRM_YTH1
RRM_3
zf-CCCH_12
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
124452490
NCBI-ProteinID:
XP_046859002
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MATSKTANTYNRQNWEDAEFPILCQTCLGDNPYLRMMKEKYGRECKICARPFTIFRWCPG
ARMRFKKTEICQTCAKMKNICQTCLLDLEYGLPVQVRDHALGLKDEMPKSDVNKEYYTQN
AERELANTDSTNPGGALGKANAPSDLLLKLARTAPYYKRNRPHICSFWVKGECKRGEECP
YRHEMPTDPNDPLADQNIKDRFYGVNDPVANKLLDRASKLPSLEAPPDKAITTLYVGGLD
GKVLEQDLRDHFYQFGEIRLITMVPKQQCAFVCFTNRYSAETAAERSFNKLIVKGRRLKI
LWGKSQGAKAAPGNEGGAKLTPVPGLPEALPPPPAITQPDENNFFNLPPSGIPLPPMNNS
SAPRHLMGIPPPPLPSGSHLMPPRLPPPPGQQHPLPYRTDGPFPPPPQRFMHPPPLMGGP
APPPNMPPPNIRPPNMPPPSIPRALANRGPPPSIHYPSQDPHRMGTAGKDPAMNLTPPNP
AS
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctctaaaacagcgaatacttacaaccgacaaaattgggaggatgcggaattt
ccaatcttatgtcagacatgtttgggcgacaatccatatttaaggatgatgaaggagaag
tatggtagagaatgtaagatttgtgcacgcccattcaccattttccggtggtgccctgga
gcaagaatgagattcaaaaagactgagatctgtcagacttgtgctaagatgaagaatatc
tgccagacttgcttgctggatcttgaatatggtttacctgttcaagttcgagatcatgct
cttggtctcaaagatgaaatgccaaaatctgatgtgaataaggaatattacactcagaat
gctgaaagagagctggcaaatacagactctaccaatcctggaggagcattagggaaggca
aatgctccaagtgatttgctgctaaagttggctcgaacggcaccatattacaaaagaaat
cgtccacacatttgctcattttgggtgaaaggagaatgtaagcgtggcgaggaatgcccc
tatcgacatgaaatgcctacagatcccaatgacccattggcagaccaaaacatcaaagat
cgattttatggtgttaatgatccagtagccaacaaacttctcgacagagcatcaaaattg
ccaagcctagaagcaccacctgacaaagctatcaccacactatatgttggtggattagat
ggaaaggtattagaacaagatttaagagaccatttttatcagtttggtgaaatccgttta
attactatggtaccaaaacaacaatgtgcttttgtatgcttcacaaaccgttactctgct
gaaactgcagctgaaaggtctttcaacaagcttattgtaaaaggacgaaggttaaaaatc
ctgtgggggaagtcacaaggtgcaaaagcggcccctggaaatgaaggaggggccaagtta
acacctgtacctgggttacctgaggcattgcctcctcctcctgcaatcacccaaccagat
gaaaacaacttctttaatcttccaccttctgggattccacttcccccaatgaataattct
tcagcacctcggcatctcatgggaataccaccaccacctttgccaagtggatcacaccta
atgccaccaagattaccaccaccaccagggcaacagcatccactaccttatcgcactgat
ggaccctttcctccaccaccacagaggtttatgcacccacctcctttgatgggaggtcca
gcccctccaccaaatatgccacctccaaatataaggccacctaatatgccaccacctagc
atacctcgagcactggccaatagagggccacctccatcaattcactatccatcacaagat
ccacacaggatgggtacagcaggaaaagatcctgccatgaaccttacaccaccaaatcca
gcatcttga
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