Xenia sp. Carnegie-2017 (soft corals): 124453233
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Entry
124453233 CDS
T08024
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
124453233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xen03021
]
124453233
03019 Messenger RNA biogenesis [BR:
xen03019
]
124453233
Transcription machinery [BR:
xen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
124453233
RNA polymerase I system
124453233
Messenger RNA biogenesis [BR:
xen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
124453233
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
Spt5-NGN
KOWx_SPT5
KOW6_SPT5
KOW7_SPT5
KOW1_SPT5
GPKOW_C
Spt5_N
DUF3912
KN17_SH3
Motif
Other DBs
NCBI-GeneID:
124453233
NCBI-ProteinID:
XP_046859961
LinkDB
All DBs
Position
Unknown
AA seq
915 aa
AA seq
DB search
MLKERSDEDLEEYYRRKYVETSQKYTKKDYDTPRGIEQQSLLPGVKDPNLWLVKCRIGEE
RATVIAMMRKAITQQFTDEPLQVKSAIAVEGLKGYIYIEAYKQTHVKQAIEGIGTLKIGQ
WNQKMVPVQEMTDVLNVVKDLVQLKAKQWVRMKRGIFKDDLAQIDYVHPSKNQVTLKMIP
RIDYTKPRGSKALESQEQEKKKRFRRPPQKLFDAEALRSNGGEIHHDGDFSLFEGNRFRQ
GFLYKNMAISALITEGIKPTLSELEKFESTTDDIDLELPTKSSKDDVTENQFAPGDNVEV
VEGELINLQGKIVSIEGSKVVMLPFHEDLKEPLNFPASELRKFFKVGDHVKVIHGKYEGD
TGLVLRVLGKTAILFSDLTMHELEVLLKDLQLCSERSSGVDSMGQHQWGDLVQLDPQTVG
VIVRIERETFSILTQHGKVVQERQQAVARRKENKHAVALDCDQQTIQVRDIVKVNDGPHK
DFQGEVKYVYRGFAFLSCKMVVENGGIIVCRTKQLQLAGGGKAAADSLGGFGGFGGGFVP
RSPRISSPAREAGGGTSASPSGRGGGFGRGRGRPGRDQTLIGKTIRISQGPYKGYIGIVK
DATETTARVELHSNCKTISVDRSRINIVGAPSRGGSVHSRTPMYGSQTPMYGSQTPGSRT
PMYGSQTPTHDGSRTPHYGSMTPSHDGSRTPLHGGAWDPSSSNTPARSENEFDYSLDVPT
PSPVGGYGTPNPATPGGFTAPFTPGTPGGIYGSEPSYSPYVDSPSPAGYANPVTPGSANP
SPISPAFAPHTPGASLDMEQPHDWVTQDIEVTISDSHQDSQLVSKKGVIRNVVGGTSTVY
LYDEKRDVSIPSKHLVPVKPSKQDKVKLIHGDDRESTGTLIQIDGTDAIIKMDSGEQKLV
CCDIVSLARLAPTIG
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaggagcgaagtgatgaagacttagaggaatattacagaagaaaatatgttgaa
acatcccaaaaatacacaaagaaagattatgatacccctcgtggaattgagcaacagagt
ttattgcctggtgtaaaggatccaaacttgtggctcgtcaaatgtaggattggagaagaa
agggcgacagttattgccatgatgaggaaagctataactcagcagtttaccgatgagcct
ctccaagtaaaatctgcaatagctgttgaaggtttaaaaggttatatttacattgaggcg
tacaaacaaacgcatgtgaaacaagcaatagaaggtataggaactttaaagattgggcaa
tggaatcaaaaaatggtacctgttcaggaaatgacagatgttctcaatgtagtaaaagac
ttagttcaacttaaggcgaaacagtgggtgagaatgaaacgtggtatctttaaagatgat
cttgctcagattgactatgttcatccatcaaaaaatcaggtcacacttaaaatgattcct
cgtatagattacacaaaacccagaggaagcaaagcattagagagtcaggaacaggaaaag
aagaaacgcttcagacgaccgcctcaaaaattgttcgatgctgaagctttgaggagcaat
ggcggtgaaattcatcatgatggcgacttcagtctatttgaaggcaatcgctttagacag
ggtttcttgtataaaaatatggccatttctgccttgattactgaaggtatcaagccaaca
ctttctgaattggaaaagtttgaaagtacaacggacgatattgacttggagttgcctacg
aagtcttccaaagatgatgtaacagaaaaccagtttgcacctggtgataatgttgaagtt
gtcgaaggtgaattgatcaacctacaagggaagattgtaagcattgaaggaagtaaagtc
gtcatgttaccttttcatgaagatttgaaagaaccgctaaattttccagcgtcagaatta
agaaaattcttcaaagttggggatcatgtcaaagtgattcatggaaaatatgaaggagat
actggtcttgtactccgcgttttgggaaagacggccattttgttctctgaccttactatg
catgagcttgaagtactattaaaagatttgcagttgtgctccgagcgtagtagcggagta
gactcgatgggtcaacatcaatggggagatttagttcaactagatccacaaaccgtcggt
gttatcgttcgtatcgagagagagacattttcaatcttgacacaacacggaaaggttgtc
caagaaagacaacaagctgttgccaggaggaaagagaataaacatgctgtagctttagat
tgcgaccagcaaaccatacaagtacgagatatcgttaaagttaatgatggtccacacaag
gattttcaaggtgaagtgaaatacgtctatcgtggttttgcctttctttcttgtaaaatg
gttgtcgaaaatggtggtataatcgtgtgtagaactaaacagcttcagcttgcgggaggt
ggaaaggctgcggctgattcactcggtggatttggaggctttggtggcggttttgtcccc
cgctcaccccgaatatcaagtcctgcacgcgaagctggtggcggaacaagtgcatcccct
tcagggcgggggggtggatttggccgcggtcgtggtagaccggggcgagatcaaaccttg
ataggaaaaaccatcagaatttcacaaggaccttataaaggttatattgggattgtaaaa
gatgccactgaaacgacagcacgggttgaacttcacagtaattgtaaaacgatttctgtt
gatcgctcacgaataaatattgttggagctccatctcgtggaggttctgttcattcaagg
acaccaatgtatggatcgcagacacctatgtatggatctcagactccaggatctcggaca
ccaatgtatggatctcagacccccactcatgatggaagcagaactcctcattatggttcc
atgacaccatcgcacgatggttcgcgcacgcctcttcatggtggggcatgggatccaagt
tcgtccaacactcctgcgagatcagagaacgagttcgattacagcctagatgttcctacg
ccatctcctgttggtggttatggaacacctaatcccgcgacacctggtggttttacagct
cctttcacacctggtacacctgggggtatctatggatctgagccaagctattcgccatat
gttgattcaccatcaccagcaggttatgcaaatcccgtgactccaggaagtgctaatcca
agtcctatatcaccagcctttgctcctcatactcctggtgcgagtttggatatggagcaa
cctcacgattgggtaacacaagatattgaagtgacaatatcagactctcatcaggattct
caacttgtttcgaaaaaaggtgtcatccgtaatgtcgtcggtggtacgagcactgtgtac
ttgtatgacgaaaagcgtgatgtcagcattcccagcaagcacttggttcctgtgaaacca
tcaaagcaggataaggtgaaattgattcatggagatgatcgtgaaagtactggaacgttg
attcaaattgacggcactgatgctataataaaaatggattcaggcgaacagaaattagtt
tgttgtgacattgtctctctggcgcgccttgcacccactataggatag
DBGET
integrated database retrieval system
