Xenorhabdus sp. TH1: WDV74_15165
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Entry
WDV74_15165 CDS
T11385
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xet Xenorhabdus sp. TH1
Pathway
xet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WDV74_15165 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xet03019
]
WDV74_15165 (rnr)
03016 Transfer RNA biogenesis [BR:
xet03016
]
WDV74_15165 (rnr)
Enzymes [BR:
xet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
WDV74_15165 (rnr)
Messenger RNA biogenesis [BR:
xet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WDV74_15165 (rnr)
Transfer RNA biogenesis [BR:
xet03016
]
Prokaryotic type
tRNA degradation factors
WDV74_15165 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WXG09944
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Position
complement(3477914..3480352)
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AA seq
812 aa
AA seq
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MSKDPFQEREAAKYESPIPSREYILDIISKHATPVSRQELAQELQLTTPDAQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRAEGHKEDYYLPADQMKMAIH
GDVVLAQPLRPDRKGRVEVRIVRVLEPKSSQIVGRYFMDAGMGFVVPDDSRLCFDILIPK
EVTCGARMGNVVVVELTNRPTRRTKAIGKIVEVLGETMGTNMAVEIALRTHEIPHSWPPM
VEKQIAGLAEHVPESAKQDRVDLRALPLVTIDGEDARDFDDAVYCERKRGGGWRLWVAIA
DVSYYVRPQTALDMEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPEVDRLCMVCEMTVS
AQGKLSSYKFYEAVMNSHARLTYTKVWKILQGDQELREHYKPLVQHIEHLHELYQALEHA
REQRGAISFESEEAKFIFNAERRIERIEPVVRNDAHKLIEECMILANIAAARFVEKHHEP
ALYRIHDRPKEESILNLRSVFNELGLSLLGGLTPEPKDYAQLMKQVADRPDHELLQTMLL
RSMKQAIYEPENRGHFGLALRSYSHFTSPIRRYPDLALHRAIKYLLAQEKGAIEQNGTPT
GGWHNDMEQMLQLGDHCSMTERRADEATRDVADWLKCDFMQDQVGNVFTGLITSVTGFGF
FVRLNDLFIDGLVHVSTLDNDYYRYDNVGQRLIGESSGTTYRLGDEVEIRVEAVHMDERN
IDFTLLSTTRKARNQGKTARNKAKKGTPERKNSKKGRDHKKSANFEPDNAFRKKKSAEKF
TEPKSGKKKKPSSKTKKIAAKLKAKRAKKSAS
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggaacgagaggctgcaaaatacgaatctcctatcccaagc
cgtgaatacatcttggatatcatttctaaacacgccacgccggtaagccgtcaggaatta
gcacaggaacttcagttaaccactccagatgcacaggaagcactgcgccgccgtttgcgg
gcaatggagcgtgacggacagttggtttttacccgccggcaatgttatgcattaccagag
cggctggatttattgaaaggcacggtgattggacaccgcgatggttatggttttctgcgt
gcggaagggcacaaagaagactattacctgccagccgatcagatgaaaatggcgatccac
ggtgatgtggtactggcacagcccttgcgaccagacagaaaaggccgcgttgaagtgcgt
atcgtgcgggttttggaacccaagagtagccagattgttggccggtattttatggatgct
ggcatgggatttgtcgtcccagatgatagccgtctctgtttcgatatcttgatcccgaaa
gaagtcacttgcggggcaagaatgggtaatgttgtggtggttgaattgacaaatcgcccg
actcgccggactaaagccattggcaaaattgttgaagtgttgggtgagacgatgggaacg
aacatggcggttgagatcgcactgcgtacccatgaaattccccatagctggccgccgatg
gtagaaaaacagattgcgggtttggctgagcatgtaccggaatcggccaagcaagaccgg
gtagatttacgggccttgccgctagtgacaatcgacggtgaagatgcacgagacttcgat
gatgcggtgtattgcgaaagaaaacggggtggtggttggcggttgtgggtagcgattgct
gatgtcagctactatgttcgtccgcaaactgctttggatatggaagcacgcagccgcggt
aactcggtttacttcccatcccaggttgtccctatgctgccggaagtgctatctaatggc
ttgtgctccctcaatccagaagttgatcgcctatgtatggtgtgtgaaatgaccgtttcc
gcccaaggcaagctctcttcctacaagttttatgaagcggtgatgaattcacacgctcgt
ttgacctataccaaagtctggaagattttgcagggtgatcaagaactacgtgagcactac
aagccgctggtgcaacatattgagcatctgcatgagctttatcaggcactggaacatgcg
cgtgaacagcgtggcgctatttcgtttgaatcggaagaagccaagtttatctttaatgca
gagcgtcgcattgaacgtatagaacccgttgtacgtaacgatgcacataaacttatcgaa
gagtgtatgatcttggcgaacattgccgctgctcgctttgtggaaaaacaccatgagcct
gcgttataccgcatccatgatcgaccaaaagaagagagtatcctgaacctgcgttcagtc
ttcaatgaattgggattgagcttgttgggtggcctgacgccagaaccaaaagattatgcg
caattgatgaaacaagttgcggatcggcccgatcacgagttattacaaacgatgctgttg
cgttctatgaagcaagcgatctatgagccggagaatcgcgggcattttggtctggcatta
cgctcttattctcacttcacttcgccaatccgccgctaccctgacctggctctgcatcgt
gcgattaagtacttattggcacaagaaaagggtgctattgagcagaacgggacgccaaca
gggggttggcacaatgatatggagcagatgctgcaattgggtgaccactgttccatgacc
gagcgccgtgctgacgaagcgacaagggatgtggctgactggttaaaatgtgatttcatg
caagatcaagtgggtaatgttttcactggattgattaccagcgtgacaggcttcggtttc
tttgtccgcttaaatgatctgtttattgacggcttggtacatgtttcaacgttggataat
gattattatcgatatgataacgtcggccagcgtttgattggtgagtcttctggaacaact
tatcgcctcggtgatgaagtcgagattcgggtggaagcggttcatatggatgaacgtaat
attgatttcaccctactttcaacaacccgtaaagcgcgtaatcaagggaagacagcccgc
aataaagcgaaaaaaggtacgccagagcgtaaaaatagtaaaaaaggtcgtgatcataaa
aaatcagccaattttgagccagataacgcctttcgtaaaaagaaaagtgcggaaaagttt
acagagcctaagtcaggcaaaaagaaaaaaccgtcaagcaagactaaaaaaattgcggca
aaactgaaagcgaagcgtgcgaaaaaaagcgcaagctaa
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