Xanthomonas euroxanthea: XSP_003026
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Entry
XSP_003026 CDS
T07902
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xeu
Xanthomonas euroxanthea
Brite
KEGG Orthology (KO) [BR:
xeu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xeu03019
]
XSP_003026 (hrpA)
Enzymes [BR:
xeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
XSP_003026 (hrpA)
Messenger RNA biogenesis [BR:
xeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
XSP_003026 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
nSTAND3
SRP54
Cas3-like_C_2
NACHT
AAA_23
T2SSE
AAA_25
CHDCT2
TsaE
Motif
Other DBs
NCBI-ProteinID:
CAD1794585
UniProt:
A0A8E4E521
LinkDB
All DBs
Position
1:complement(3585254..3589381)
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AA seq
1375 aa
AA seq
DB search
MSAIDTDLANTLRERRRAVDGAMSRDRGRLLGLWSRWQGKPGNPQVREAFEQALAASQAQ
RQARAEQQPAITLDEQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVAEELKTPLGTTVGFQVRFTDRVGEQSRIKFMTDGILLA
EIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFARH
FDNAPVIDVEGRTFPVEVRYRPLEGGADDGGDGDGERGNGRDGERTVNDAIVAAIDEITR
IDPRGDVLMFLPGEREIRDAHQALERRKYRETEVVPLYARLSAADQDRVFNPGPRRRLVL
ATNVAETSLTVPRIRYVVDPGFARIKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEG
ICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEEFPFLEAPDERAVADGW
QQLLELGAIDANRRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAFLGIQDPR
ERPPEAREAADNAHALFADARSEFVGILRLWEAYRQVHEDLTQSKLRDWCNRHFLGFLRM
REWRELHRQLRLLCEELGWSEEPAAAMLAPLLAGASAPAREDGHNANRPTRGQLHRAARL
AREGKPDPNAPPAQATSAAASKQADVAEASARISERERAAAYQALHRALLAGLPTQIGHR
TEKGDFLAARQRRFVPFPGSALARKPPPWMLAATLLDTQKVWGMTNAAIEPDWAIAELGH
LLARKHFDPHWSRAQGQVVASEQISLFGLVLAPKKPVHFGKIDPAGAHDLFVRQGLVTGE
INTRAAFIADNLKVLEQAREEEAKLRRAGIVADEDWQARWYLDRIPAELHSASGLDAWWK
TLPPDKRRSLHWTLNDLLPGEGSEADRFPKYFPLGDARLPLHYRFEPGAIDDGVTLDVPL
HLLNALDPARLSWLAPGFVADKASALIRSLPKAQRRNYVPAPDFGRAFYEAYSIASADAI
RGELARFLTKATGTQVAALDFDEESLDTHLLMNLRLRDDDGKVLAESRDLDGLRARFGER
AGQAFAARAGRALAAEGLRDFPSTPIPEQVAGEAGVPAYPALVDQGEDAALRIFADRNEA
AQAHPRGVRRLLEIALADKIKQARKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLA
DGLGAIRDPGAFAQRRDEAGKRLFGEAMERLTLAESILGAVAELKPLLEAPLMGWARGNL
DDMEQQLRALVHAGFLRETPAEALASYPRYLKAMILRTERAKRDPARDQARMLELKPFVD
ALDQAAARGLQQRDEWQSLRWDLEELRVSVFAQELGARSGVSAKKLSQRVAALRN
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgacaccgaccttgccaacaccttgcgtgagcgccgccgcgccgtcgat
ggcgcgatgagccgcgaccgtggccggttgctcggtctatggtcgcgctggcagggcaag
cccggcaacccgcaggtgcgcgaggccttcgagcaggcgctggcagcgtcgcaggcgcaa
cgccaggcgcgtgccgagcagcagccggccatcacgctggacgagcaactgccgatcgcg
cgcgaggccgagcgcatcatcgcgctgatccgcgaccatcaggtcgtcgtcatcgccggc
gagaccggctcgggcaagaccacccagctgcccaagctgtgtctggcggccgggcgcggc
gcggccggcatgatcggctgcacccagccacgccggatcgccgcgcgggcggtggccgcg
cgcgtggccgaggagctgaagacgccgctgggcaccacggtgggcttccaggtgcgcttt
accgaccgggtcggcgaacagtcgcggatcaagttcatgaccgacggcatcctgctggcc
gagatcgccagcgaccgctggttgtcggcctacgacaccatcatcgtggacgaagcgcac
gagcgcagcctcaacatcgatttcctgctcggctatctcaagcagctgctgcacaagcgc
tccgatctgaagttgatcgtcacctcggccaccatcgacaccgagcgcttcgcccggcat
ttcgacaacgcgccggtgatcgacgtggaaggccggaccttcccggtcgaggtgcgctac
cggccgctcgaaggcggggccgacgacggcggcgacggcgacggcgagcgtggcaacggc
cgcgatggcgagcgcaccgtcaacgatgcgatcgtggcggcgatcgacgagatcacccgc
atcgatccgcgtggcgacgtgctgatgttcctgcccggcgagcgcgagatccgcgatgcg
caccaggcgctggaacggcgcaagtaccgcgaaaccgaagtggtgccgctgtacgcgcgg
ctgtcggcggccgaccaggaccgcgtgttcaacccggggccgcgccggcgcctggtgctg
gccaccaacgtggccgaaacctcgctgaccgtgccgcgcatccggtatgtggtggatccg
ggctttgcgcggatcaagcgctacagcccgcgccagaagctggaccgcctgcatatcgag
ccgatctcgcaggccagcgccaaccagcgcatgggccgctgcggccgcattgccgaaggc
atctgctaccgcctgtatgccgaagcggattttgccgcgcggccggcattcaccgacccg
gaaatccgccgctcgtccttgtcgggcgtgatcctgcgcatgctgcaactggggctgggg
cggatcgaggagttcccgttcctggaagcgccggacgaacgcgcagtcgccgacggctgg
cagcagttgctggagctgggtgcgatcgatgccaatcggcgcctcaccgccatcggccgg
cagatggcgcgcctgccggtggacgtcaagctggcgcgcatgctggtggccgcgcaacag
cacggctgcctgcgcgagatgatcatcatcgccgcgttcctgggtatccaggatccgcgc
gagcgcccgcccgaagcacgcgaggcggccgacaacgcgcacgcgctgtttgccgatgca
cgctctgaattcgtcggcatcctgcggttgtgggaggcctaccgacaggtgcacgaggat
ctcacccagtccaagttgcgcgattggtgcaaccggcatttcctcggcttcctgcgcatg
cgcgaatggcgtgagctgcatcggcagctgcgcctgttgtgcgaggagctggggtggagc
gaggagccggccgctgcgatgctggcgccattgctggcaggtgccagcgcgcctgcgcgc
gaggacgggcacaacgccaaccggccgacgcgcgggcagttgcatcgcgctgcgcggctg
gcgcgtgaaggcaagccggatccgaatgcgccacctgcgcaagccacgtccgccgctgcc
agcaagcaggccgacgttgccgaggcctcggcacgcattagcgagcgcgaacgcgcggcg
gcctatcaggccctgcatcgtgcgctgttggccggcctgccgacgcagatcggccatcgc
accgaaaaaggcgattttctcgccgcgcggcaacgccggttcgtgccgtttcccggctcg
gcactggcacgcaagccgccgccgtggatgctggccgccacgctgctggatacgcaaaaa
gtctggggcatgaccaatgccgcgatcgagccggactgggcgatcgccgagctggggcat
ctgctggcacgcaagcatttcgacccgcattggtcgcgtgcgcaggggcaggtggtggca
tccgagcagatcagcctgttcggcctggtgctggcgccgaaaaagccggtccacttcggc
aagatcgatccggccggcgcacacgacctgttcgtgcgccagggcctggtcaccggcgag
atcaatacgcgtgcggcgttcatcgccgacaacctcaaggtgctggagcaggcacgcgag
gaagaagccaagctgcgccgcgccggcatcgtcgccgacgaagactggcaggcgcgctgg
tatctggatcgcatcccggccgagctgcactcggccagcgggctggatgcatggtggaag
accttgccgccggacaagcgccgcagcctgcactggacgttgaacgacctgttgcccggc
gaaggcagcgaggccgaccggtttcccaagtatttcccgctgggcgatgcgcggctgccc
ttgcattaccgcttcgagccgggcgccatcgatgacggggtgacgctggatgtgccgctg
cacctgctcaatgcgctggatccggcgcggctgtcgtggctggcgccgggcttcgtcgcc
gacaaggcatcggccttgattcgcagcctgcccaaggcgcaacggcgcaactatgtgccg
gcgccggatttcgggcgcgcgttctacgaggcctacagcatcgcctcggccgacgctatc
cgtggcgagctggcgcgcttcctgaccaaggccaccggcacgcaggtggcggcgctggat
ttcgacgaagagtcgctggacacgcatctgctgatgaacctgcgcctgcgcgatgacgac
ggcaaggtactggccgagtcgcgcgatctggacggattgcgcgcacgctttggcgagcgt
gccggccaggccttcgccgcacgtgcggggcgcgcgctggcggccgagggcttgcgcgat
tttccgtccacgccgattcccgagcaggtggccggcgaagccggcgtgccggcgtatccg
gcgctggtggaccagggcgaagacgcggcgctgcgcatctttgccgaccgcaacgaagcg
gcgcaggcgcatccgcgcggcgtgcgccggctgctggaaatcgcgctggccgacaagatc
aagcaggcgcgcaagcaactgccggtgtcgcccaagaccggcctgctgtacgcggcgatc
gaatcgcaggagcggctgcgcggcgatctggtcgatgccgcgctcaacgcggtgctggcc
gatggcctgggcgcgatacgcgaccccggtgcctttgcgcagcgccgcgacgaggccggc
aagcgcctgttcggcgaggcgatggaacggctgacgctggccgaaagcatccttggcgcc
gtggccgaactcaagccgctgctggaggcgccgttgatgggctgggcgcgcggcaacctg
gacgatatggagcagcagctgcgcgcgctggtgcatgccggcttcctgcgcgaaacaccg
gccgaggcactggccagttatccgcgctatctcaaggcgatgatcctgcggaccgagcgt
gccaaacgcgatccggcccgcgaccaggcacgcatgctcgaactcaagccgttcgtggat
gcattggaccaggcggccgcgcgtgggttgcagcaacgtgatgaatggcagtcgctacgc
tgggatcttgaggaattgcgcgtgtcggtctttgcgcaggagctgggcgccaggtcgggc
gtttcggcgaagaagttgtcgcagcgggtggcggcgttgcgcaactga
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