Xylella fastidiosa 9a5c: XF_0192
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Entry
XF_0192 CDS
T00033
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xfa
Xylella fastidiosa 9a5c
Pathway
xfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XF_0192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfa03019
]
XF_0192
Enzymes [BR:
xfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XF_0192
Messenger RNA biogenesis [BR:
xfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XF_0192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AAF83005
UniProt:
Q9PGV6
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All DBs
Position
201673..203013
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AA seq
446 aa
AA seq
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MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL
QRLMAASSNVGAGKPRALVLTPTRELATQVYDSLRGYAKYQRVSSAVIYGGVGMGNQLDV
LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQN
RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLHLL
AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLV
ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQI
VRLLDRDMDIRDVPDFEPQVPIRWGNSAPGKSKQPAGQHPPRKSQHRRAFGKASVQTAHA
LTKQSGVQHSNGSRNRDGMFPVHQRG
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgaaactttgggattgttgccttccttactgcgtgctcttagcgagcaaggt
tacgaaatcccgaccccaattcagcagcaggcgattccattggcattagctggccacgat
ttgcttgctgccgcgcaaacagggacaggtaagacggctgcgttcggcttgcctgtattg
caacgattgatggccgcttcatctaatgttggtgcgggtaagccgcgtgctttggtgctg
acaccgacccgtgagctggcgactcaggtctacgacagtctacgtggttacgccaagtat
caacgtgtatcaagtgcggtgatttatggtggtgtggggatggggaatcagttggatgtg
ctgcgccgtggcgtagatttgttgattgcctgcccgggtcgtttgattgatcatattgaa
cgtcgcagtgtggatttgtcaggcgtcgggattttggtattagatgaggctgatcgcatg
cttgacatgggtttcctcccctcaattaaacgtatcctcggcaaactaccgcggcagaat
cgccaaactctgctgttctctgcgacatttgctgagccgattaaacagttggcgttagag
tttatgtgccgcccacgcgaggtgatggtggcgtcgcataacaccgttgccgagaccatt
acgcatcgtgtgcatccggtcgatgttagccgcaagcgtgaattgttgttgcatctgttg
gctcaagatagcagggagcagacactggtgttcgtgcggaccaagcatggcagtgacaag
cttgctacgttcttggagaaatacggaatcaagacagcggcgatccacggtaataagact
cagggccagcgtctgcgtgccttaaacagtttcaaagcagggcgagttaccgtgctggtg
gccactgacattgctgcgcgcggaattgatattgaccaattgccaaaggtgatcaattac
gatttgcctatggtggctgaggattatgtgcatcgcatcgggcgtactggacgcaatggt
gtgcagggagaggcaatttcattagtcactcaggaggacgctaagttattgcgtcagatc
gtgcgtttgcttgatcgtgacatggatattcgcgatgtaccggatttcgaacctcaagtc
ccgatccgttggggtaacagtgctccgggaaagagtaagcagcctgctggacagcaccca
ccacgtaagagtcaacatcggcgagcattcggcaaagcgtctgtgcagacggcgcatgct
ttaacaaaacaatcaggcgtacaacatagcaatgggtcccgtaatcgtgatggaatgttt
ccggttcatcagcgtggttga
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