Xylella fastidiosa 9a5c: XF_0239
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Entry
XF_0239 CDS
T00033
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xfa
Xylella fastidiosa 9a5c
Pathway
xfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XF_0239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfa03019
]
XF_0239
03016 Transfer RNA biogenesis [BR:
xfa03016
]
XF_0239
Enzymes [BR:
xfa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
XF_0239
Messenger RNA biogenesis [BR:
xfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XF_0239
Transfer RNA biogenesis [BR:
xfa03016
]
Prokaryotic type
tRNA degradation factors
XF_0239
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH_KhpA-B
KH-I_KHDC4-BBP
S1_2
KH_PNO1_2nd
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
AAF83052
UniProt:
Q9PGQ9
LinkDB
All DBs
Position
250660..252819
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AA seq
719 aa
AA seq
DB search
MQTLSIVDPFIKHHPKETLVAKITKTFQYGKHTVTLETGEVARQANGAVIVKMDDTVLLV
TVVAAKTAREGQDFFPLTVDYQEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPL
FPEDYKNEVQIIAMVMSLDPEIDGDIPAMIGASAALSLAGIPFKGPIGAAKIGYNDGQYI
LNPTVSELKKSQLELVVAGTANAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSL
TAEAGTQPSDWVPPAKNDALVIALKEVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLA
GRLEVEGWNLAELLKEFGELEYRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGS
GLFTRGETQAIVVTTLGTARDGQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRRE
IGHGRLARRGVLAVMPSLDEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAP
VAGIAMGLVKEGERFVVLSDILGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMR
QALQQAKVGRLHILGEMDKALAAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAIT
KDTGTQIDIQDDGTIIIASVNNAAAREAKCRIEQITSDVEPGRIYEGKVAKIMDFGAFVT
ILPGKDGLVHVSQISSERVERVGDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEEVASI
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaacactgagcatagttgatccgtttataaagcatcatcctaaggaaactctcgtg
gcaaaaatcaccaaaaccttccagtatggcaagcataccgtgactctggaaaccggcgaa
gtcgcccgtcaggcgaatggagctgttatcgtcaagatggatgacactgtgcttctggtc
actgttgttgctgcaaaaactgcgcgagaggggcaggattttttcccattgacggttgat
tatcaggagaagttctatgccggtgggcggatcccgggtagcttctttaagcgtgaaggc
cgtgcgaccgaaaaagaaacgttgatttctcgattgattgaccgtccgatccgtccgttg
tttcctgaagattacaagaacgaagttcagattatcgcgatggttatgtcactcgatccg
gaaatcgacggtgatattcccgcaatgattggtgcttcagctgcattatcactggctggt
attccgtttaagggaccgattggtgctgctaagattggttacaatgatggtcaatatatc
ctcaatcccactgtcagtgaactgaaaaaatctcagttggagcttgttgtcgctggtact
gccaatgccgtgctgatggttgagtctgaggctgcattgctttccgaagaagtgatgtta
ggggcggtcattttcggtcatcgcgaaatgcaaaaagtgattcaggtgattgattcactg
accgcagaagctggtacgcaaccgtctgattgggtgcccccggccaagaatgatgctttg
gtcattgcgttgaaggaagtaattggtggccgcttgtccgacgctttccatatcagagac
aagttgcagcgtcgcgacgcgatcgctgctgttaaagatgatgtgattcagcagttggct
ggccgtcttgaagttgagggctggaacttggcggaattgttaaaggaattcggtgaactg
gaataccgtactatgcgtgatgcattgttggacactaaagtccgcattgatggacgctct
ctggaagctgtacgcccgatcaccgtaaaggttggggttctgccgcgtgttcatggttcc
gggttatttacacgtggagagactcaagcgattgtagtcactactttgggtacagcacgc
gatggccaagtaattgatgcagtcactggtgaatataaggaaaattttttattccattac
aacttcccgccatattcagtgggcgaatgtggccgttttggagtaccgaagcgccgtgag
atcggtcacggccgtcttgctaggcgcggggtattggctgtgatgccgagtttggatgaa
ttcccatacacgatccgtgttgtctcggagatcaccgaatcgaatggttcttcatctatg
gcttcggtgtgcggttcctcgctggcgctcatggatgctggtgtgccggtgaaagcacca
gtggctggcattgcgatgggcttagtcaaggaaggggagcgctttgttgtgttgagcgac
attctcggggacgaagatcaccttggcgatatggatttcaaggttgctggtacctccgaa
ggagtgtccgcattacagatggacattaagattgaaggcatcacagaagagattatgagg
caggctttacagcaggctaaggttggtcgtttacatatccttggcgagatggacaaggca
ctggctgcaccacgtgccgagttgtccgactacgctcctcgcctgctgacgattaagatt
catcctgacaaaatccgtgatgtcattggtaaaggtggttcgaccatccaggcgatcact
aaggatactggaacacagatcgatatccaggacgatggtacgatcatcatcgcttcagtc
aacaatgctgcagcccgggaggctaagtgtcgtatcgagcaaattacctcggatgttgag
ccgggccgtatttatgagggcaaggttgctaagattatggactttggcgcttttgtgact
attttgcctggcaaagatggtttagtgcacgtttcccagatatccagcgagcgtgtggag
cgtgttggcgacaagctgaaggaaggcgatgtggttcgtgtgaaggtcttagaagttgat
aagcaaggtcggatccgtctttcgatcaaagccgtcgaggaagaggttgccagcatatga
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