Xylella fastidiosa 9a5c: XF_0252
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Entry
XF_0252 CDS
T00033
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xfa
Xylella fastidiosa 9a5c
Pathway
xfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XF_0252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfa03019
]
XF_0252
03009 Ribosome biogenesis [BR:
xfa03009
]
XF_0252
Enzymes [BR:
xfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XF_0252
Messenger RNA biogenesis [BR:
xfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XF_0252
Ribosome biogenesis [BR:
xfa03009
]
Prokaryotic type
rRNA helicases
XF_0252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
AAA_19
CMS1
Cas3-like_C_2
AAA_22
P-loop_SecA
Flavi_DEAD
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AAF83065
UniProt:
Q9PGP6
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All DBs
Position
complement(262848..264692)
Genome browser
AA seq
614 aa
AA seq
DB search
MLSGVLMSNPSSTPLLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQ
TGTGKTAAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYG
GQSYGQQLAALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVE
EVLRKLPASRQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLH
KLDALTRILEVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQL
KDGKLDILVATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTP
REKGMLRQIERATHQPIEAMQLPSVDAVNDTRVAKFFGRISNALVVGAEIDFYRKLLQRF
ESEHNVPAIEIAAALARLLQGDSPFLLSVPTRAQRERSEPPSEHVKRSSSFKQTERPNHT
EHPKRPQRNAPARNTPEFGMESYRIEVGRIHGVKPANIVGAIANEAGLESRYIGRIDIRD
DHSVLDLPAEMPHEILQHLKKVWVSGQQLQMRRIDTTETTATAREFKSKPGGAGKFPPKP
HHNKSTKPKPPYSG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
gtgctctccggagttctcatgtcaaatccatcctctacgccgctgctgtttgcagatctc
ggcctctccgatgctgtgatgcaagccgtcacaaaaatcggttatgaaactccgtcgccc
atccaggcggcgaccatcccagccttgctcgctgggcgcgatgtgctgggccaagcccag
accggcactgggaagactgccgcattcgcgctaccgttgctcacacgcaccgttctgaac
caggtcaagccgcaagtgctcgtactggcacccacccgcgaactggctatccaagttgcc
gaagcattccagcgctatgctgcctcgatctctggcttccgtgtcctacccgtgtacggc
ggccaatcctatggccaacaactggccgcactgaaacgcggtgttcatgtgatcgtcggt
actccgggccgggtgattgatcacctagagcgcggcaccctggacctatcggaattaaaa
acgctggtcctcgacgaagccgacgaaatgctgcgtatgggtttcattgaggacgttgaa
gaagtgctacggaagttgcccgcttcacgccaggtcgctctgttctcggcaaccatgcca
ccacagatccgccgtatcgcacaaacatatctacaagatccgattgaagtcaccatcgcc
accaaaaccacgaccgcggccaacatccgccagcgttactggtgggtcagcggcctccac
aagcttgatgcactcacacgcattcttgaggtggaaaccttcgacgcaatgattatcttc
gtgcgcaccaaagctgccaccgaagaattggccgagaagttgcaggcacgtggcctgacc
gccgcagcgatcaatggcgatatgcaacaagcgcaacgcgaacgcaccattcaccaactc
aaagatggcaagctggatatcctcgttgccaccgacgtcgccgcacgtggtttggacgta
gaacgtatcagccacgtactgaactacgacatcccttacgacgttgagagctacgtccac
cgtatcggacgcactgggcgtgccggtcgcagcggcgaagcaatcctctttgtgactcca
cgcgaaaaaggcatgctgcgccagattgaacgtgccactcaccaaccgatcgaagccatg
caactgcccagtgtggatgcagtcaacgacacgcgcgtcgccaaatttttcggacgcatc
agcaatgctttggtggtcggcgctgaaatcgacttctaccgcaaactgcttcaacgtttc
gagagcgagcacaatgtccctgccattgagatcgctgctgccctggcacgactccttcag
ggggatagccccttcctgctgagtgtcccaacgcgcgcccaacgcgaacgcagcgagcca
ccatcggagcatgtcaaacgctcctcatccttcaagcagacagagcgcccaaaccacact
gaacaccccaagcgcccccaacgtaacgcaccagcacgcaataccccggaattcggtatg
gagtcttaccgcatcgaagtcggccgcatacacggtgtgaagccagctaatatcgtcggt
gccatcgccaacgaagctggattagagagccgctacattggccggatcgacatccgtgac
gatcactcggttctagatctccccgcagagatgccacacgaaatcctgcaacacctaaaa
aaggtctgggtatcaggacagcaactacaaatgcgtcggatcgacacaaccgaaacaacc
gcaactgcacgggaatttaagtcaaaaccgggtggcgctggcaaattcccgccgaaaccg
catcacaacaaatcaaccaaaccaaaaccaccatacagcggttga
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